Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200419
Identifier: 87200419
GI number: 87200419
Start: 2574470
End: 2575483
Strand: Reverse
Name: 87200419
Synonym: Saro_2406
Alternate gene names: NA
Gene position: 2575483-2574470 (Counterclockwise)
Preceding gene: 87200420
Following gene: 87200410
Centisome position: 72.31
GC content: 66.27
Gene sequence:
>1014_bases ATGAAGCGACGCACATTTCTCGGCCTCCTTCCCGCGGCGGCGGGCGCCTGCGTGCTGCCGGCCCATGCCTTTGCGGCGAG CGACCAGCACCGTTGCCGCGTGATCGTCGACAACGACCTGTCCGGCGATCCTGACGGGCTGGTGCAACTGGCACAGCACC TGCGCTCGCCTTCGGTCGATATCCGCGCGATCATCGGCTCGCACCTCCACGCCGACGAAGCGTGGTCCAAGTCGGAGCAT CAGGCGACGGACGGCGCCAACCGGGCGCGTGAGCTGCTGGGCGTCATGGGCCTGTCGGGCAAGGTGCCGGTGATTGCGGG TTCGGAAAGGGCGATGCCCTCGATGCAGGTCTCGGCGCGCACCGCCGCAACCGATGCTATCATCGCCGAGGCGATGCGCG ACGACCCGCTGCCCCTGTTTTATTGCGCGGGCGCGGGTCTCACGGACCTTGCCATGGCATGGCTGATCGAGCCGCGCATC GGCAAGCGGTTGACGCTGGTCTGGATCGGTGGGCCCGAGTATCCGGGTCTTGGTCTGCCGGTGCCTGGCGCCACGCCGGG CGAATACAACATCACCATCGACGTGCTGGCGGCGCAGGTGATCTTCAACCGGTCCGACATTCCGATCTGGCAGGTGCCGC GCAATACCTATCGCCGGATGCTGATGTCGATGGCGGAACTCGAGCAGATGAAGGCGCAGGGCGGCACGGGCGCCTGGCTG GTGGAACAGATCGAGGGCGTTTCGCAAGCGGCGGCCGGTGCAGGGCTCAAGGTCGGCGAAACCTATGCCCTTGGCGACAG CCCGCTGGTGACGCTCACCGCGCTGCAATCCGCTTTCGAAGCGGACCCGTCGTCAAGCGACTATGTGATGGTTCCCGCGC CGACGGTCATGGCCGATGGCACCTGCAAGCGGAACCCGAAGGGGCGCCCGATCCGGGTCTATACCACGATCGACACTCGC CTGACCTTCGGCGACATGATGGCCAAGCTCGGGAAACAAGGGCTCAGGAAATAG
Upstream 100 bases:
>100_bases TTAGCGTCGCCGTGCCGGCGGTTCGCTTCGGTCCGGACATCGAAGCGCGCATTCTCGTTCTGTTGCAGCGCACCGCCGCC GCCATCCAGGGAGGTCAACC
Downstream 100 bases:
>100_bases GGGCCGGATCGCTCCGGCCCCACCCGTTTACTTCTTCATGCCTTCGGTGATGCGCTGGGTTTCGGCGCGGGTGGATTCCG GGCCGGTGTTGCGCTTGTAG
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Inosine/Uridine-Preferring Nucleoside Hydrolase; Inosine-Uridine Preferring Nucleoside Hydrolase
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MKRRTFLGLLPAAAGACVLPAHAFAASDQHRCRVIVDNDLSGDPDGLVQLAQHLRSPSVDIRAIIGSHLHADEAWSKSEH QATDGANRARELLGVMGLSGKVPVIAGSERAMPSMQVSARTAATDAIIAEAMRDDPLPLFYCAGAGLTDLAMAWLIEPRI GKRLTLVWIGGPEYPGLGLPVPGATPGEYNITIDVLAAQVIFNRSDIPIWQVPRNTYRRMLMSMAELEQMKAQGGTGAWL VEQIEGVSQAAAGAGLKVGETYALGDSPLVTLTALQSAFEADPSSSDYVMVPAPTVMADGTCKRNPKGRPIRVYTTIDTR LTFGDMMAKLGKQGLRK
Sequences:
>Translated_337_residues MKRRTFLGLLPAAAGACVLPAHAFAASDQHRCRVIVDNDLSGDPDGLVQLAQHLRSPSVDIRAIIGSHLHADEAWSKSEH QATDGANRARELLGVMGLSGKVPVIAGSERAMPSMQVSARTAATDAIIAEAMRDDPLPLFYCAGAGLTDLAMAWLIEPRI GKRLTLVWIGGPEYPGLGLPVPGATPGEYNITIDVLAAQVIFNRSDIPIWQVPRNTYRRMLMSMAELEQMKAQGGTGAWL VEQIEGVSQAAAGAGLKVGETYALGDSPLVTLTALQSAFEADPSSSDYVMVPAPTVMADGTCKRNPKGRPIRVYTTIDTR LTFGDMMAKLGKQGLRK >Mature_337_residues MKRRTFLGLLPAAAGACVLPAHAFAASDQHRCRVIVDNDLSGDPDGLVQLAQHLRSPSVDIRAIIGSHLHADEAWSKSEH QATDGANRARELLGVMGLSGKVPVIAGSERAMPSMQVSARTAATDAIIAEAMRDDPLPLFYCAGAGLTDLAMAWLIEPRI GKRLTLVWIGGPEYPGLGLPVPGATPGEYNITIDVLAAQVIFNRSDIPIWQVPRNTYRRMLMSMAELEQMKAQGGTGAWL VEQIEGVSQAAAGAGLKVGETYALGDSPLVTLTALQSAFEADPSSSDYVMVPAPTVMADGTCKRNPKGRPIRVYTTIDTR LTFGDMMAKLGKQGLRK
Specific function: Unknown
COG id: COG1957
COG function: function code F; Inosine-uridine nucleoside N-ribohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35970; Mature: 35970
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRTFLGLLPAAAGACVLPAHAFAASDQHRCRVIVDNDLSGDPDGLVQLAQHLRSPSVD CCCCHHEEEHHHCCCCEEECHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC IRAIIGSHLHADEAWSKSEHQATDGANRARELLGVMGLSGKVPVIAGSERAMPSMQVSAR HHHHHCCCCCCCHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHH TAATDAIIAEAMRDDPLPLFYCAGAGLTDLAMAWLIEPRIGKRLTLVWIGGPEYPGLGLP HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC VPGATPGEYNITIDVLAAQVIFNRSDIPIWQVPRNTYRRMLMSMAELEQMKAQGGTGAWL CCCCCCCCEEEEHHHEEHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHH VEQIEGVSQAAAGAGLKVGETYALGDSPLVTLTALQSAFEADPSSSDYVMVPAPTVMADG HHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEECC TCKRNPKGRPIRVYTTIDTRLTFGDMMAKLGKQGLRK CCCCCCCCCCEEEEEEECCEECHHHHHHHHHHHHCCC >Mature Secondary Structure MKRRTFLGLLPAAAGACVLPAHAFAASDQHRCRVIVDNDLSGDPDGLVQLAQHLRSPSVD CCCCHHEEEHHHCCCCEEECHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC IRAIIGSHLHADEAWSKSEHQATDGANRARELLGVMGLSGKVPVIAGSERAMPSMQVSAR HHHHHCCCCCCCHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHH TAATDAIIAEAMRDDPLPLFYCAGAGLTDLAMAWLIEPRIGKRLTLVWIGGPEYPGLGLP HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC VPGATPGEYNITIDVLAAQVIFNRSDIPIWQVPRNTYRRMLMSMAELEQMKAQGGTGAWL CCCCCCCCEEEEHHHEEHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHH VEQIEGVSQAAAGAGLKVGETYALGDSPLVTLTALQSAFEADPSSSDYVMVPAPTVMADG HHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEECC TCKRNPKGRPIRVYTTIDTRLTFGDMMAKLGKQGLRK CCCCCCCCCCEEEEEEECCEECHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA