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The map label for this gene is ihfA

Identifier: 87200378

GI number: 87200378

Start: 2513528

End: 2513824

Strand: Reverse

Name: ihfA

Synonym: Saro_2365

Alternate gene names: 87200378

Gene position: 2513824-2513528 (Counterclockwise)

Preceding gene: 87200379

Following gene: 87200377

Centisome position: 70.58

GC content: 60.61

Gene sequence:

>297_bases
ATGCGTTCAATTGGTACCCTGACACGAGCCGACCTGGCGGAAAGCATCAACCGCCGCGTCGGACTGTCTCGTGCGGATTC
GCTGGAAATGGTCGAATCCATTTTGCAGCACATGTGCGATGCTCTGGCGGATGGCCAGAACGTCAAGATTTCAGGCTTCG
GCACCTTCCTGCTGCGCGACAAGGCGGAGCGGATCGGGCGCAATCCCAAGACCGGCATCGAGGTTCCAATCACCCCGCGC
CGTGTCCTGAGCTTCCGCGCCAGTCAGATGCTGAAGGACCGTATCGGCCAGGCGTGA

Upstream 100 bases:

>100_bases
ACGCATTCTAATCCTTTGTCCCCAAGGCATTGCATTGCGTTCCGTAGAAACACCGTTATTCTCGGACGCCTTGGTAGGTC
CTATTGGGGGAACGAGGGGG

Downstream 100 bases:

>100_bases
GATCGCCGGCATGAATGCACCGCTTCTTCCCGACATGGGGGATGGCAAGGACCCCGGCGCCTTCCGCACCATAGGTGAGG
TGGCAAAGACGCTGGGTATC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MRSIGTLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERIGRNPKTGIEVPITPR
RVLSFRASQMLKDRIGQA

Sequences:

>Translated_98_residues
MRSIGTLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERIGRNPKTGIEVPITPR
RVLSFRASQMLKDRIGQA
>Mature_98_residues
MRSIGTLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERIGRNPKTGIEVPITPR
RVLSFRASQMLKDRIGQA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=50, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=34.8314606741573, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1787141, Length=89, Percent_Identity=37.0786516853933, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=34.8314606741573, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10854; Mature: 10854

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIGTLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRD
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
KAERIGRNPKTGIEVPITPRRVLSFRASQMLKDRIGQA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSIGTLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRD
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
KAERIGRNPKTGIEVPITPRRVLSFRASQMLKDRIGQA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA