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The map label for this gene is ycgE [C]

Identifier: 87200377

GI number: 87200377

Start: 2513062

End: 2513517

Strand: Reverse

Name: ycgE [C]

Synonym: Saro_2364

Alternate gene names: 87200377

Gene position: 2513517-2513062 (Counterclockwise)

Preceding gene: 87200378

Following gene: 87200374

Centisome position: 70.57

GC content: 62.94

Gene sequence:

>456_bases
ATGAATGCACCGCTTCTTCCCGACATGGGGGATGGCAAGGACCCCGGCGCCTTCCGCACCATAGGTGAGGTGGCAAAGAC
GCTGGGTATCCGCCAGCATGTCCTCCGGTATTGGGAAGAACAGTTTCCGATGCTCCGTCCGCTCACCAGAGCGGGCGGGC
GTCGTTACTATCGTCCCGAAGACATTGCCCTGATCGCCGAGATCGACCGCCTCCTGAACCGGGAAGGCTACACGATCCGC
GGCGCCAAGCAGGCGCTCAAGGTTCGCGGCAAGCGGGCTGGTACTGCGGTGCGTGAAGACGCGGTCGAACTGACCTCCTC
AGCTTCCGGTGTCGCCGTGCAAGCTGTCGCTGGGCTTGTCCAATCATTGGCGGCAACCGACTTCGCATCGTTGGCAGCTG
AACTGGGCGGCATCCGGGAACGTCTCGCGGTCGCAATCGAGGACGACGCGGGTTAA

Upstream 100 bases:

>100_bases
AAGACCGGCATCGAGGTTCCAATCACCCCGCGCCGTGTCCTGAGCTTCCGCGCCAGTCAGATGCTGAAGGACCGTATCGG
CCAGGCGTGAGATCGCCGGC

Downstream 100 bases:

>100_bases
TCTACCAGCACCGGTCCCAACGTGGGGTCGAGGTCGCGTGGACGTTTCAGTTCGACCAGTCGTCCGCAGCGATCCGCGAC
GTCGGACCACCGGTCAATGT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MNAPLLPDMGDGKDPGAFRTIGEVAKTLGIRQHVLRYWEEQFPMLRPLTRAGGRRYYRPEDIALIAEIDRLLNREGYTIR
GAKQALKVRGKRAGTAVREDAVELTSSASGVAVQAVAGLVQSLAATDFASLAAELGGIRERLAVAIEDDAG

Sequences:

>Translated_151_residues
MNAPLLPDMGDGKDPGAFRTIGEVAKTLGIRQHVLRYWEEQFPMLRPLTRAGGRRYYRPEDIALIAEIDRLLNREGYTIR
GAKQALKVRGKRAGTAVREDAVELTSSASGVAVQAVAGLVQSLAATDFASLAAELGGIRERLAVAIEDDAG
>Mature_151_residues
MNAPLLPDMGDGKDPGAFRTIGEVAKTLGIRQHVLRYWEEQFPMLRPLTRAGGRRYYRPEDIALIAEIDRLLNREGYTIR
GAKQALKVRGKRAGTAVREDAVELTSSASGVAVQAVAGLVQSLAATDFASLAAELGGIRERLAVAIEDDAG

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 16275; Mature: 16275

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPLLPDMGDGKDPGAFRTIGEVAKTLGIRQHVLRYWEEQFPMLRPLTRAGGRRYYRPE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCH
DIALIAEIDRLLNREGYTIRGAKQALKVRGKRAGTAVREDAVELTSSASGVAVQAVAGLV
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHH
QSLAATDFASLAAELGGIRERLAVAIEDDAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAPLLPDMGDGKDPGAFRTIGEVAKTLGIRQHVLRYWEEQFPMLRPLTRAGGRRYYRPE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCH
DIALIAEIDRLLNREGYTIRGAKQALKVRGKRAGTAVREDAVELTSSASGVAVQAVAGLV
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHH
QSLAATDFASLAAELGGIRERLAVAIEDDAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1961742 [H]