Click here to switch to the map view.

The map label for this gene is cpsA1 [H]

Identifier: 87200362

GI number: 87200362

Start: 2493944

End: 2495143

Strand: Reverse

Name: cpsA1 [H]

Synonym: Saro_2348

Alternate gene names: 87200362

Gene position: 2495143-2493944 (Counterclockwise)

Preceding gene: 87200364

Following gene: 87200361

Centisome position: 70.06

GC content: 68.25

Gene sequence:

>1200_bases
ATGCTCCAGCAAGAACTGCTCGAACAGGCGCGCGGATTTTCCGACGCCATCGTCGCGTTGCGACGCGCGATCCATGCCGA
ACCCGAACTCGGCCTGCACACCCCCCGCACGCGCGACAAGGTGCGCAACGCGCTTGCCCACCTGCCGCTCGAATGGCGCG
AGGGGCCGTCGACCACGGGGCTCGTTGCCACGCTCAAGGGCCGGGCTGGGCCGGGTCGCCGCGTCCTCCTGCGCGGCGAC
ATGGACGCCCTGCCGATGACAGAGGAAACCGGGTTGCCGTTTTCCTCGACCATCCCCGGCGCGATGCATGCCTGCGGGCA
CGATACCCACACCGCCATGCTGGCGGGCGCCGCCGAACTTCTTTGCGCGCGGGCAGACCGGATCGCGGGCGAGGTCCAGT
TCATGTTCCAGCCGGGAGAGGAAGGCTTCCACGGCGCGCGTTTCATGCTCGAGGACGGGTTGATCGATCCGCTGCCGGAT
GCCGCGTTTGCGCTGCACGTCATGCCCAACAGCCCGCACGGCCTCGTTGCTGGGCGCGCCGGGCCGCTGCTCGCCTCGGC
AGACCAGTTCGACATCGTGGTGCAGGGGCGGGGCGGCCACGCCTCGATGCCGCACGATGCTCTCGACCCGGTGCCAGTCG
CCTGCGAGATCGTGACGGCGCTTCAGGCGGTCGTCACCCGCAAGTTCCCCGTCTCCGACCCGGTCGTCGCCACCGTGGCC
AGGATTGAGGCGGGCACCGCGCACAACGTCATTGCCGATCGCGTCGCCATGCGCGGCACGCTGCGCACGCTTTCCGCCAC
CAATCGCGCCCGCCTCCACGAAGCGCTGACCCGCGTCGCCACCAACATCGCCGCCGCCCACGGGCTGAGCGCCGATGTCG
CGATCACTCCCGGTTTTCCGGTCACCGTCTGCGATGCCCGCGCGGTCGATCTTGGCGAGAAGGTCGTCCAGGATCTCACC
GGAGAGCGTGGCTTCCATCGCCTCGACAGCCCGATCATGGGGGCCGAGGATTTCTCTTACGTCCTTGAAAAGGTGCCAGG
CGCGATGTTCTTCCTCGGGGTGGCCCACGAGGGCGTCGACTGGCGCTCCTGCTGCTCCATCCATTCGACCCGCATGATGG
TCGATGAAAGCGTGCTGCCGCTTGGCACTGCAGTCCTTGCGGGTTGCGCCGAACGCTTCCTTGCCGAGGGTTTCGCATGA

Upstream 100 bases:

>100_bases
AACGTGCCATTTGTGCATGTGCAAGCCGATTCCGACGGCTCGACAGCAGGCGCGTGCCGTGCCAGCCTGAAGGCAAGGCG
ATCCCCCGAAGAGGCTTCCC

Downstream 100 bases:

>100_bases
TCTGGTGGAACGGCGAGATGCCGTCAATGGATCGGCTGACCCGGCTCGGCAGTTCCTCGATGCCCGCGCACCTCGGCATC
GAGTTCGTCGATTGCGGCGA

Product: peptidase M20D, amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MLQQELLEQARGFSDAIVALRRAIHAEPELGLHTPRTRDKVRNALAHLPLEWREGPSTTGLVATLKGRAGPGRRVLLRGD
MDALPMTEETGLPFSSTIPGAMHACGHDTHTAMLAGAAELLCARADRIAGEVQFMFQPGEEGFHGARFMLEDGLIDPLPD
AAFALHVMPNSPHGLVAGRAGPLLASADQFDIVVQGRGGHASMPHDALDPVPVACEIVTALQAVVTRKFPVSDPVVATVA
RIEAGTAHNVIADRVAMRGTLRTLSATNRARLHEALTRVATNIAAAHGLSADVAITPGFPVTVCDARAVDLGEKVVQDLT
GERGFHRLDSPIMGAEDFSYVLEKVPGAMFFLGVAHEGVDWRSCCSIHSTRMMVDESVLPLGTAVLAGCAERFLAEGFA

Sequences:

>Translated_399_residues
MLQQELLEQARGFSDAIVALRRAIHAEPELGLHTPRTRDKVRNALAHLPLEWREGPSTTGLVATLKGRAGPGRRVLLRGD
MDALPMTEETGLPFSSTIPGAMHACGHDTHTAMLAGAAELLCARADRIAGEVQFMFQPGEEGFHGARFMLEDGLIDPLPD
AAFALHVMPNSPHGLVAGRAGPLLASADQFDIVVQGRGGHASMPHDALDPVPVACEIVTALQAVVTRKFPVSDPVVATVA
RIEAGTAHNVIADRVAMRGTLRTLSATNRARLHEALTRVATNIAAAHGLSADVAITPGFPVTVCDARAVDLGEKVVQDLT
GERGFHRLDSPIMGAEDFSYVLEKVPGAMFFLGVAHEGVDWRSCCSIHSTRMMVDESVLPLGTAVLAGCAERFLAEGFA
>Mature_399_residues
MLQQELLEQARGFSDAIVALRRAIHAEPELGLHTPRTRDKVRNALAHLPLEWREGPSTTGLVATLKGRAGPGRRVLLRGD
MDALPMTEETGLPFSSTIPGAMHACGHDTHTAMLAGAAELLCARADRIAGEVQFMFQPGEEGFHGARFMLEDGLIDPLPD
AAFALHVMPNSPHGLVAGRAGPLLASADQFDIVVQGRGGHASMPHDALDPVPVACEIVTALQAVVTRKFPVSDPVVATVA
RIEAGTAHNVIADRVAMRGTLRTLSATNRARLHEALTRVATNIAAAHGLSADVAITPGFPVTVCDARAVDLGEKVVQDLT
GERGFHRLDSPIMGAEDFSYVLEKVPGAMFFLGVAHEGVDWRSCCSIHSTRMMVDESVLPLGTAVLAGCAERFLAEGFA

Specific function: Can release basic, acidic, aromatic, and, to a lesser extent, aliphatic amino acids [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=385, Percent_Identity=27.012987012987, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 42389; Mature: 42389

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQELLEQARGFSDAIVALRRAIHAEPELGLHTPRTRDKVRNALAHLPLEWREGPSTTG
CCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCC
LVATLKGRAGPGRRVLLRGDMDALPMTEETGLPFSSTIPGAMHACGHDTHTAMLAGAAEL
EEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
LCARADRIAGEVQFMFQPGEEGFHGARFMLEDGLIDPLPDAAFALHVMPNSPHGLVAGRA
HHHHHHHHCCEEEEEEECCCCCCCCHHEEECCCCCCCCCCCEEEEEECCCCCCCEEECCC
GPLLASADQFDIVVQGRGGHASMPHDALDPVPVACEIVTALQAVVTRKFPVSDPVVATVA
CCCEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RIEAGTAHNVIADRVAMRGTLRTLSATNRARLHEALTRVATNIAAAHGLSADVAITPGFP
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
VTVCDARAVDLGEKVVQDLTGERGFHRLDSPIMGAEDFSYVLEKVPGAMFFLGVAHEGVD
EEEECCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEHHCCCCC
WRSCCSIHSTRMMVDESVLPLGTAVLAGCAERFLAEGFA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLQQELLEQARGFSDAIVALRRAIHAEPELGLHTPRTRDKVRNALAHLPLEWREGPSTTG
CCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCC
LVATLKGRAGPGRRVLLRGDMDALPMTEETGLPFSSTIPGAMHACGHDTHTAMLAGAAEL
EEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
LCARADRIAGEVQFMFQPGEEGFHGARFMLEDGLIDPLPDAAFALHVMPNSPHGLVAGRA
HHHHHHHHCCEEEEEEECCCCCCCCHHEEECCCCCCCCCCCEEEEEECCCCCCCEEECCC
GPLLASADQFDIVVQGRGGHASMPHDALDPVPVACEIVTALQAVVTRKFPVSDPVVATVA
CCCEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RIEAGTAHNVIADRVAMRGTLRTLSATNRARLHEALTRVATNIAAAHGLSADVAITPGFP
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
VTVCDARAVDLGEKVVQDLTGERGFHRLDSPIMGAEDFSYVLEKVPGAMFFLGVAHEGVD
EEEECCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEHHCCCCC
WRSCCSIHSTRMMVDESVLPLGTAVLAGCAERFLAEGFA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7559343; 11427726; 1597179 [H]