Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200364
Identifier: 87200364
GI number: 87200364
Start: 2496607
End: 2497980
Strand: Reverse
Name: 87200364
Synonym: Saro_2350
Alternate gene names: NA
Gene position: 2497980-2496607 (Counterclockwise)
Preceding gene: 87200366
Following gene: 87200362
Centisome position: 70.14
GC content: 68.27
Gene sequence:
>1374_bases TTGGCAGAGTACTGGACGCAAGATAGGCAAGGTTTCATGCGAAACAAGTTCCGCGCCGCTGCGCTAACCGCCGCCATTTT CGTCCCCCTTGCCGCACAGGCCGAAGAACCGAAAGGCGATGTCGCCTGGGACATTCTCGCCGGCCTCACCAGCGAAGTCG GCCCGCGCATGCCGGGCAGCGAGGCCGAAGCGCGCGCGCGAACATGGGCGCAGGCGCGGCTCGAGGCGCTCGGTTTCAGC GGCGTCGCCATCGAACCGTTCACGATCCGCGGCTACGTGCGCGGCCGCGACGAGGCGAGCCTCAAGGCCCCGATCCCGTT CCGCCTGGCTGTCACCGCACTTGGCTACAGCGGCACAACGCCCGACAAGGGCATCGAAGGCGACGTCGTCTACTTCCCCA CGCTCGATGCGCTGAAGGCAGCGCCCGCCGGATCGCTTGCCGGAAAGATCGCCTTCATCGACCATGCGATGAAGCGCAGC CAGGATGGCAGCGGCTATGGTCCCTACGGCAACGTTCGTCGCCAGGGGCCCGCCATCGCTGCGGCCAAGGGGGCCATGGG CGTCGTCATCCGCTCCATCGGCACGGACAGCCACCGCAATCCCCACACCGGCGGCACGACGTTTCCCGATGGCGTGAGCC CGATCCCGGCGGGCGCAGTGTCCAACCCGGACGCCGATCTCATCGCCCGCATCGCCGGCGGCGGCAAGCCGATGCGGCTG GCGATGACGCTTACCGGCAGGACGACCGACAACCTGCCTTCGGGCAATGTCATCGGCGACTTGCCCGGGCGCGACCCATC GCTTCCCCCCATCCTGCTCGGCTGCCACCTCGATAGCTGGGACCTCGGCACGGGCGCCATCGACGATGCGGCGGGCTGCG CCATCATCACCGCCGCCGCGCTCAACGCGCAGGAAGGCGGCAGGCCGCTGCGCACGATCCGCGTCCTGTGGGCGGGGTCC GAGGAACTCGGCGGCTTCGGCGGCAAGGCCTATGCGCAAAGGCACGCGGAGCCGCACGCGCTCGCGATGGAGAGCGATTT CGGCGCCGCGCGGGTCTGGCGTGTCAATTTCAACCTTGGCAGTGCCAGCAAGCCCCTGGCCGACCGTATCGCCGCCGCCC TTTCACCGATGGGCATCGTGCGCGGATCGGGCAAGGCCGATGGCGGGACCGATGTCGAGCCGGTGATCGAGAAGCAGAAG CTCGGCGTGGTCGATCTCAACCAGGACGGCACCCACTACTTCGACCTGCACCACACTCCCGACGACACTCTCGACAAGGT CGACCCGGCCGATCTGGCGCAAAACGTCGCCGCGTGGACCGAAGTTCTCAGGATCGTCGCGAACGAGCCGGGTCCCATCG TCGCGGCCGACTGA
Upstream 100 bases:
>100_bases GTCGGGTCCTTGGGTATAAGGCGAATAGAGTTGCGCCGCCTCTATCCGAGCGCAACCGTGCGGGCAAGCGGGGCTTGCGC CGGAAGGGTGGCGGAGGGGC
Downstream 100 bases:
>100_bases ACTTGCGCCCTTACGAAAAAAGGCTCCCCGTCGCGGGGGAGCCTTTTTCCGTTGCGTGGCGCCAAGGCCCGTTCAGATGC GTTCGATGATGATCGCCGGT
Product: peptidase M28
Products: NA
Alternate protein names: Peptidase; Aminopeptidase; M28 Family Peptidase; M28D Family Peptidase; Peptidase Family; Endoribonuclease L-PSP; Peptidase Family M
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MAEYWTQDRQGFMRNKFRAAALTAAIFVPLAAQAEEPKGDVAWDILAGLTSEVGPRMPGSEAEARARTWAQARLEALGFS GVAIEPFTIRGYVRGRDEASLKAPIPFRLAVTALGYSGTTPDKGIEGDVVYFPTLDALKAAPAGSLAGKIAFIDHAMKRS QDGSGYGPYGNVRRQGPAIAAAKGAMGVVIRSIGTDSHRNPHTGGTTFPDGVSPIPAGAVSNPDADLIARIAGGGKPMRL AMTLTGRTTDNLPSGNVIGDLPGRDPSLPPILLGCHLDSWDLGTGAIDDAAGCAIITAAALNAQEGGRPLRTIRVLWAGS EELGGFGGKAYAQRHAEPHALAMESDFGAARVWRVNFNLGSASKPLADRIAAALSPMGIVRGSGKADGGTDVEPVIEKQK LGVVDLNQDGTHYFDLHHTPDDTLDKVDPADLAQNVAAWTEVLRIVANEPGPIVAAD
Sequences:
>Translated_457_residues MAEYWTQDRQGFMRNKFRAAALTAAIFVPLAAQAEEPKGDVAWDILAGLTSEVGPRMPGSEAEARARTWAQARLEALGFS GVAIEPFTIRGYVRGRDEASLKAPIPFRLAVTALGYSGTTPDKGIEGDVVYFPTLDALKAAPAGSLAGKIAFIDHAMKRS QDGSGYGPYGNVRRQGPAIAAAKGAMGVVIRSIGTDSHRNPHTGGTTFPDGVSPIPAGAVSNPDADLIARIAGGGKPMRL AMTLTGRTTDNLPSGNVIGDLPGRDPSLPPILLGCHLDSWDLGTGAIDDAAGCAIITAAALNAQEGGRPLRTIRVLWAGS EELGGFGGKAYAQRHAEPHALAMESDFGAARVWRVNFNLGSASKPLADRIAAALSPMGIVRGSGKADGGTDVEPVIEKQK LGVVDLNQDGTHYFDLHHTPDDTLDKVDPADLAQNVAAWTEVLRIVANEPGPIVAAD >Mature_456_residues AEYWTQDRQGFMRNKFRAAALTAAIFVPLAAQAEEPKGDVAWDILAGLTSEVGPRMPGSEAEARARTWAQARLEALGFSG VAIEPFTIRGYVRGRDEASLKAPIPFRLAVTALGYSGTTPDKGIEGDVVYFPTLDALKAAPAGSLAGKIAFIDHAMKRSQ DGSGYGPYGNVRRQGPAIAAAKGAMGVVIRSIGTDSHRNPHTGGTTFPDGVSPIPAGAVSNPDADLIARIAGGGKPMRLA MTLTGRTTDNLPSGNVIGDLPGRDPSLPPILLGCHLDSWDLGTGAIDDAAGCAIITAAALNAQEGGRPLRTIRVLWAGSE ELGGFGGKAYAQRHAEPHALAMESDFGAARVWRVNFNLGSASKPLADRIAAALSPMGIVRGSGKADGGTDVEPVIEKQKL GVVDLNQDGTHYFDLHHTPDDTLDKVDPADLAQNVAAWTEVLRIVANEPGPIVAAD
Specific function: Unknown
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7706387, Length=395, Percent_Identity=30.6329113924051, Blast_Score=174, Evalue=2e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47729; Mature: 47598
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEYWTQDRQGFMRNKFRAAALTAAIFVPLAAQAEEPKGDVAWDILAGLTSEVGPRMPGS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC EAEARARTWAQARLEALGFSGVAIEPFTIRGYVRGRDEASLKAPIPFRLAVTALGYSGTT HHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEECCCCCCEECCCCEEEEEEEECCCCCC PDKGIEGDVVYFPTLDALKAAPAGSLAGKIAFIDHAMKRSQDGSGYGPYGNVRRQGPAIA CCCCCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE AAKGAMGVVIRSIGTDSHRNPHTGGTTFPDGVSPIPAGAVSNPDADLIARIAGGGKPMRL ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE AMTLTGRTTDNLPSGNVIGDLPGRDPSLPPILLGCHLDSWDLGTGAIDDAAGCAIITAAA EEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHEEHHHH LNAQEGGRPLRTIRVLWAGSEELGGFGGKAYAQRHAEPHALAMESDFGAARVWRVNFNLG HCHHHCCCCEEEEEEEEECCHHHCCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEEECCC SASKPLADRIAAALSPMGIVRGSGKADGGTDVEPVIEKQKLGVVDLNQDGTHYFDLHHTP CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCCEEEEEECCC DDTLDKVDPADLAQNVAAWTEVLRIVANEPGPIVAAD CHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECC >Mature Secondary Structure AEYWTQDRQGFMRNKFRAAALTAAIFVPLAAQAEEPKGDVAWDILAGLTSEVGPRMPGS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC EAEARARTWAQARLEALGFSGVAIEPFTIRGYVRGRDEASLKAPIPFRLAVTALGYSGTT HHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEECCCCCCEECCCCEEEEEEEECCCCCC PDKGIEGDVVYFPTLDALKAAPAGSLAGKIAFIDHAMKRSQDGSGYGPYGNVRRQGPAIA CCCCCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE AAKGAMGVVIRSIGTDSHRNPHTGGTTFPDGVSPIPAGAVSNPDADLIARIAGGGKPMRL ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE AMTLTGRTTDNLPSGNVIGDLPGRDPSLPPILLGCHLDSWDLGTGAIDDAAGCAIITAAA EEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHEEHHHH LNAQEGGRPLRTIRVLWAGSEELGGFGGKAYAQRHAEPHALAMESDFGAARVWRVNFNLG HCHHHCCCCEEEEEEEEECCHHHCCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEEECCC SASKPLADRIAAALSPMGIVRGSGKADGGTDVEPVIEKQKLGVVDLNQDGTHYFDLHHTP CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCEEEECCCCCEEEEEECCC DDTLDKVDPADLAQNVAAWTEVLRIVANEPGPIVAAD CHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA