Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is gmuE [H]

Identifier: 87199902

GI number: 87199902

Start: 1991234

End: 1992139

Strand: Reverse

Name: gmuE [H]

Synonym: Saro_1885

Alternate gene names: 87199902

Gene position: 1992139-1991234 (Counterclockwise)

Preceding gene: 87199903

Following gene: 87199897

Centisome position: 55.93

GC content: 67.11

Gene sequence:

>906_bases
ATGAGCAAGGACGGACTTATCGGTGCGATCGAGGCGGGCGGGACCAAGTTCATCCTAGCCCTGACCACGCAACAGGGCGA
AATTCTCGCCCGCACGCGCCTGCCCACCAACACGCCGGTCGAAACCTGGCCTGCGATGCAGGACTTCTTCCGCCAGGCGA
GCGCCCAGCACGGGCCGCTGGCCGGATTTGGCGTCGCCAGTTTCGGCCCGATAGACATCGATCCGGAATCGGCAAGCTAC
GGCACATTCACGACCACCCCCAAGCCGGGCTGGTCGGGCGCGCGTTTCCACGATGCGCTCGCGGGGTTCGGCGTGCCGAT
CAAGGTCGAAACCGACGTCAACGGAGCCGCCATCGGCGAATGGATGGCGGGCGCGGGCCAGGGCTGCCGTACGCTCGCCT
ATACCACGATCGGCACTGGCGTCGGCACCGGCGTCGTGCGTGATGGCAGGGCGCTGATGGGTTTTTCGCATTACGAGAGC
GGCCACATCCTGCCGCCGCACAATCACGCCGCCGATCCCTTCCCCGGGACCTGCCCCTACCACGGCAACTGCATCGAAGG
CCTCGCCAGTGGTCCCGCCATCGAGCGGCGCTGGGGCCGCAGCCTCGACAAGCTGGGCGATGAACCCGGCGCGGTCGCGC
TAATCGCGGGCTATATTGCCCACCTCGCCAGCACGCTTGTCCTACTTCACATGCCCGACGGCCTGATCTTCGGCGGCGGG
GTCATGAAGGCTCCCGGCCTGGTCGAGGCAGTGCGCAAGGCGACCGCGGCAAAGCTCAACGGCTATGTCCATCATCCGCG
ACTGGACGATGGGCTCGAAAGCTACATCGTGACCCCGGGCCTAGGCGACGACGCCGGGATCACCGGCGCCATCGAACTGG
GCCGTCAGGCCATCGCGGCGGGATAG

Upstream 100 bases:

>100_bases
CGGGCGAACCCCGCTGGACGATGCTCGTGGCCGCGCTGATGATGGCCGCTGCCGCAGGGGCGATGATGCTGGTGCGCGAA
CACAGGAGGGATAGCGCGGC

Downstream 100 bases:

>100_bases
GCCACGCTGCACGCGCCCTCGCCGCGCAAGGCCCAGGCCTCGCCGGCGAGGCGATGCTGCAACGTCAGAACTGCCCCGCC
CCGGTTCGCGAAGACCTCAA

Product: fructokinase

Products: NA

Alternate protein names: Glucomannan utilization protein E [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASY
GTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYES
GHILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG
VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG

Sequences:

>Translated_301_residues
MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASY
GTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYES
GHILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG
VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG
>Mature_300_residues
SKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASYG
TFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESG
HILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGGV
MKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG

Specific function: Seems to be involved in the degradation of glucomannan [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI87081733, Length=270, Percent_Identity=30.7407407407407, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: =2.7.1.4 [H]

Molecular weight: Translated: 31118; Mature: 30986

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPL
CCCCCCEEEEECCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
AGFGVASFGPIDIDPESASYGTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGE
EECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH
WMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESGHILPPHNHAADPFPGTCPY
HHHCCCCCCEEEEEEECCCCCCCCEEECCCEEECEEECCCCCCCCCCCCCCCCCCCCCCC
HGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG
CCHHHHHHHCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEECCC
VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAA
CCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHCC
G
C
>Mature Secondary Structure 
SKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPL
CCCCCEEEEECCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
AGFGVASFGPIDIDPESASYGTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGE
EECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH
WMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESGHILPPHNHAADPFPGTCPY
HHHCCCCCCEEEEEEECCCCCCCCEEECCCEEECEEECCCCCCCCCCCCCCCCCCCCCCC
HGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG
CCHHHHHHHCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEECCC
VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAA
CCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]