Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is gmuE [H]
Identifier: 87199902
GI number: 87199902
Start: 1991234
End: 1992139
Strand: Reverse
Name: gmuE [H]
Synonym: Saro_1885
Alternate gene names: 87199902
Gene position: 1992139-1991234 (Counterclockwise)
Preceding gene: 87199903
Following gene: 87199897
Centisome position: 55.93
GC content: 67.11
Gene sequence:
>906_bases ATGAGCAAGGACGGACTTATCGGTGCGATCGAGGCGGGCGGGACCAAGTTCATCCTAGCCCTGACCACGCAACAGGGCGA AATTCTCGCCCGCACGCGCCTGCCCACCAACACGCCGGTCGAAACCTGGCCTGCGATGCAGGACTTCTTCCGCCAGGCGA GCGCCCAGCACGGGCCGCTGGCCGGATTTGGCGTCGCCAGTTTCGGCCCGATAGACATCGATCCGGAATCGGCAAGCTAC GGCACATTCACGACCACCCCCAAGCCGGGCTGGTCGGGCGCGCGTTTCCACGATGCGCTCGCGGGGTTCGGCGTGCCGAT CAAGGTCGAAACCGACGTCAACGGAGCCGCCATCGGCGAATGGATGGCGGGCGCGGGCCAGGGCTGCCGTACGCTCGCCT ATACCACGATCGGCACTGGCGTCGGCACCGGCGTCGTGCGTGATGGCAGGGCGCTGATGGGTTTTTCGCATTACGAGAGC GGCCACATCCTGCCGCCGCACAATCACGCCGCCGATCCCTTCCCCGGGACCTGCCCCTACCACGGCAACTGCATCGAAGG CCTCGCCAGTGGTCCCGCCATCGAGCGGCGCTGGGGCCGCAGCCTCGACAAGCTGGGCGATGAACCCGGCGCGGTCGCGC TAATCGCGGGCTATATTGCCCACCTCGCCAGCACGCTTGTCCTACTTCACATGCCCGACGGCCTGATCTTCGGCGGCGGG GTCATGAAGGCTCCCGGCCTGGTCGAGGCAGTGCGCAAGGCGACCGCGGCAAAGCTCAACGGCTATGTCCATCATCCGCG ACTGGACGATGGGCTCGAAAGCTACATCGTGACCCCGGGCCTAGGCGACGACGCCGGGATCACCGGCGCCATCGAACTGG GCCGTCAGGCCATCGCGGCGGGATAG
Upstream 100 bases:
>100_bases CGGGCGAACCCCGCTGGACGATGCTCGTGGCCGCGCTGATGATGGCCGCTGCCGCAGGGGCGATGATGCTGGTGCGCGAA CACAGGAGGGATAGCGCGGC
Downstream 100 bases:
>100_bases GCCACGCTGCACGCGCCCTCGCCGCGCAAGGCCCAGGCCTCGCCGGCGAGGCGATGCTGCAACGTCAGAACTGCCCCGCC CCGGTTCGCGAAGACCTCAA
Product: fructokinase
Products: NA
Alternate protein names: Glucomannan utilization protein E [H]
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASY GTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYES GHILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG
Sequences:
>Translated_301_residues MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASY GTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYES GHILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG >Mature_300_residues SKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPLAGFGVASFGPIDIDPESASYG TFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGEWMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESG HILPPHNHAADPFPGTCPYHGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGGV MKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAAG
Specific function: Seems to be involved in the degradation of glucomannan [H]
COG id: COG1940
COG function: function code KG; Transcriptional regulator/sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ROK (nagC/xylR) family [H]
Homologues:
Organism=Escherichia coli, GI87081733, Length=270, Percent_Identity=30.7407407407407, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000600 [H]
Pfam domain/function: PF00480 ROK [H]
EC number: =2.7.1.4 [H]
Molecular weight: Translated: 31118; Mature: 30986
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPL CCCCCCEEEEECCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC AGFGVASFGPIDIDPESASYGTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGE EECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH WMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESGHILPPHNHAADPFPGTCPY HHHCCCCCCEEEEEEECCCCCCCCEEECCCEEECEEECCCCCCCCCCCCCCCCCCCCCCC HGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG CCHHHHHHHCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEECCC VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAA CCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHCC G C >Mature Secondary Structure SKDGLIGAIEAGGTKFILALTTQQGEILARTRLPTNTPVETWPAMQDFFRQASAQHGPL CCCCCEEEEECCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC AGFGVASFGPIDIDPESASYGTFTTTPKPGWSGARFHDALAGFGVPIKVETDVNGAAIGE EECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH WMAGAGQGCRTLAYTTIGTGVGTGVVRDGRALMGFSHYESGHILPPHNHAADPFPGTCPY HHHCCCCCCEEEEEEECCCCCCCCEEECCCEEECEEECCCCCCCCCCCCCCCCCCCCCCC HGNCIEGLASGPAIERRWGRSLDKLGDEPGAVALIAGYIAHLASTLVLLHMPDGLIFGGG CCHHHHHHHCCCHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEECCC VMKAPGLVEAVRKATAAKLNGYVHHPRLDDGLESYIVTPGLGDDAGITGAIELGRQAIAA CCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]