Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is phnA [H]
Identifier: 87199847
GI number: 87199847
Start: 1930793
End: 1931098
Strand: Reverse
Name: phnA [H]
Synonym: Saro_1830
Alternate gene names: 87199847
Gene position: 1931098-1930793 (Counterclockwise)
Preceding gene: 87199848
Following gene: 87199846
Centisome position: 54.22
GC content: 62.75
Gene sequence:
>306_bases GTGAGCGACGAAGAAGACTATGTGTACGACGAGGAAAGCGGCGAATGGATGCCCGCATCCGAACTGGCCGCCAAACGTGC CGCCGCAAGCACCGTCGAGGTCCGCGATGCAGTGGGCAACCTCCTTGCCGACGGGGACCAGGTGACGCTCATCAAGGACC TTGAGGTCAAGGGCGCCGGGCAGACGCTCAAGCAGGGCACCCTGATCAAGTCGATCCGACTTACCGGGGACCCGCAGGAA ATCGACTGCAAGTATCCCGGCATCAAGGGCCTGGTCCTGCGCGCTGAATTCGTGCGCAAGCGCTAG
Upstream 100 bases:
>100_bases CTGATGGTCCTGCTCGGCGGGAAACTTATCGTCGACGCGGTGATTTGAACTGGCTTTCCGTGTCCCGGAGTGCCAACGCG AAGAGGACAGGAGAACCGCG
Downstream 100 bases:
>100_bases AGGCTCCACGCGCGCGACAGCCCGCAGGGAATCGCGCGCGCCGTCATGCAGTAGGTGGAAAGCGCCTAAAAATCGTATGC ATTGCATACATTTTTTCGGC
Product: PhnA protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 101; Mature: 100
Protein sequence:
>101_residues MSDEEDYVYDEESGEWMPASELAAKRAAASTVEVRDAVGNLLADGDQVTLIKDLEVKGAGQTLKQGTLIKSIRLTGDPQE IDCKYPGIKGLVLRAEFVRKR
Sequences:
>Translated_101_residues MSDEEDYVYDEESGEWMPASELAAKRAAASTVEVRDAVGNLLADGDQVTLIKDLEVKGAGQTLKQGTLIKSIRLTGDPQE IDCKYPGIKGLVLRAEFVRKR >Mature_100_residues SDEEDYVYDEESGEWMPASELAAKRAAASTVEVRDAVGNLLADGDQVTLIKDLEVKGAGQTLKQGTLIKSIRLTGDPQEI DCKYPGIKGLVLRAEFVRKR
Specific function: Unknown
COG id: COG2824
COG function: function code P; Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790547, Length=98, Percent_Identity=45.9183673469388, Blast_Score=79, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004624 - InterPro: IPR013988 - InterPro: IPR013987 [H]
Pfam domain/function: PF03831 PhnA; PF08274 PhnA_Zn_Ribbon [H]
EC number: NA
Molecular weight: Translated: 11070; Mature: 10938
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDEEDYVYDEESGEWMPASELAAKRAAASTVEVRDAVGNLLADGDQVTLIKDLEVKGAG CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC QTLKQGTLIKSIRLTGDPQEIDCKYPGIKGLVLRAEFVRKR CCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEHHHHHCC >Mature Secondary Structure SDEEDYVYDEESGEWMPASELAAKRAAASTVEVRDAVGNLLADGDQVTLIKDLEVKGAG CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC QTLKQGTLIKSIRLTGDPQEIDCKYPGIKGLVLRAEFVRKR CCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]