Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is fpvA [H]
Identifier: 87199840
GI number: 87199840
Start: 1923888
End: 1925978
Strand: Reverse
Name: fpvA [H]
Synonym: Saro_1823
Alternate gene names: 87199840
Gene position: 1925978-1923888 (Counterclockwise)
Preceding gene: 87199845
Following gene: 87199839
Centisome position: 54.08
GC content: 65.66
Gene sequence:
>2091_bases GTGTTGCACCGCTTCGAAATTCTTTCCGCCGTTTCCCTGGCCGCGATCGCCCTGAACGCGACCGCCGCCCATGCCGACGA AGCGGAGGACACCGAAAACCGCATTACCGTCATCGGCGACCGCGCCGAAGGCGTGGCCAGCGGTGCCACCGGCCTTCCCC TCGCCATTGTCGACACCCCGCAGTCGGTCACCGTGATCGACCGCGGCGTGCTCGACGATTTCGCGTTCGACGAAGTCAAC GACGTCCTGCGCTATGTCACCGGCGTCAACGTCGAGGAGGCGGAGACCGACCGCACCTATTACAACGCGCGCGGTTTCGA CATCACAGAGGCAATGGTCGACGGCATCCAGCTCCCCAACATCTGGGGCCCCTCGATCGGCTCGCTCGACACCGTCATGT GGGATTCAATCGAGGTCGTGCGCGGTGCCAACGGCCTTCTCTCGGGCGTCGGCAACCCTTCCGGCACGATCAACTATCGC CGCAAGCACTCAACGGGCGAGCGCCGTATCTCTGGCGAGCTCACCGCCTCCTCGTGGAACCGCATGCGCGGCGAATTCGA CATCGACATGCCGCTCACCGCTGACGGCAACTGGGGCGTGCGCATCGCGGGCGCCGCGCAGAACGCGGACTCGTACCTGC GTGACTACCGCTCCAGCCGCACCGCAATACAGGCCGTGGTCGACGGCCGCCTGTCCGACAGTCTTGCCGTCTCCTTCGGC TATGCTCGCCAGCAGGGCACCTCGCGCGGCGTGCTGTGGGGTGCACTTCCGCTCCTCGACAGCGCGGGCAACCAGCTTGA CTGGGACGTCCCCACTTCGACCACCCAGGACTGGACCTACTGGAAGAACAGCGACCAGACCGCGTTCGGCGAAGCGACCT GGACCTTCGCGCCGGGCTGGTCGGTCAGGACCCACCTCACCCGCCGCGTGAACGACGAACCCTCGCGTCTGTTCTACGTC TACGGCACGCCCGACGCAGACACCGGCCTCGGCCTCTACGGCTACCCGGGCGGCTACCTTTCCACCGCACGAGGCTGGAT CTGGGACAACCGGCTCGACGGCACCTTCAAGCTCTTCGGCCGCGACCAGAAGCTCACTGTCGGCGTCCAGCGAACTGCCG CAAAGTTCGGTTACCTGACCTACCCCGTCGCAACGACCGATCCCGCATGGGGCGCACTGCCCTCGTTGCAAAGCGGCTGG GACGGCAGCGAAGTAGCATACCCGGCCTTCGGCGACCCGGTCGAAAGCGCGCGCATCAACGACAGGCAGTGGCGCGTGCG GGCCGCGACGGATCTTGAACTGACCGACCGCATCGGCCTGATCCTCGGCGCCAACTACGTCGACGTGCAGACCACCGGCT TCACCTTCGGCGTCAGTGCCGCCCGCAGCGAAAGCGCGGTCAGCCCGTTCGTCGGCGCAACCTTCAAGGTCGTCCCCGGC GTCAACTTCTACGCAAGCTACAGCGATATCTTCAATCCGCAGAAGGAACTCGGCACCGACCTGAGGCCCGTAGGCTCGGC CAAGGGCAAGAGCTGGGAGGCAGGTCTCAAGGGCGAGACCCCAGACAAGGCCCTTTTCGGCTCGGTGGCGCTGTTCCGTT CCGAACAGTCCAACCTCGCAGAATCCTCCGGGTATGACGCGGACCTCGGCCAGACGCTCTACACCGGCATTTTCGTGCGC AGCCAGGGCATCGAGGCCGAGATCGGCGGGCGGATCGCCTCCGGCCTGACTCTTCAGGGCGGCGTGACCCACTTGTCGCT AGAAGGCCGCGACGGCGCGCCTGTGCGAACTTACGTGCCGCGCACGACCGCCAATCTCCTCCTGCGCTGGGAACCGGTCG AAAAGCTCCAGCTCGGCGCGGCGCTGCGCTGGCAGGACGATATCTCGACCACCAACACCCTCGGCACGATCCGCCAGGGC GATTACGCCACGCTGCAACTCCAGGCCGGATACAAGCTGACCGACTATGTCAGCTTCAACCTGAATGTCGCCAACGTCAC CAATCACAAGCACCTCGCCAGCCTCTACTGGGACCAGTCGTTCTACGCTCCGCCGCGCAGCGTGACCGGCTCGATCCGGA TGACCTTCTGA
Upstream 100 bases:
>100_bases GCCCCTGTCATTCCTTATTAATGCGAATGATTCTTAGTTGCATTGACTCTTGAGAACGACTCGCACTAAGGACCACCCCG TCATCTGACGGGAGTTCAAC
Downstream 100 bases:
>100_bases TGGCGACGAGCGCGCCCCGCTCGTTCTTTCTGCCCCGGCCGCTCGCGCTGCCGGGGCGGGGTTTCTGGGTGATCGCCCAC CGCTGGGCGGGCCTTACCCT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 696; Mature: 696
Protein sequence:
>696_residues MLHRFEILSAVSLAAIALNATAAHADEAEDTENRITVIGDRAEGVASGATGLPLAIVDTPQSVTVIDRGVLDDFAFDEVN DVLRYVTGVNVEEAETDRTYYNARGFDITEAMVDGIQLPNIWGPSIGSLDTVMWDSIEVVRGANGLLSGVGNPSGTINYR RKHSTGERRISGELTASSWNRMRGEFDIDMPLTADGNWGVRIAGAAQNADSYLRDYRSSRTAIQAVVDGRLSDSLAVSFG YARQQGTSRGVLWGALPLLDSAGNQLDWDVPTSTTQDWTYWKNSDQTAFGEATWTFAPGWSVRTHLTRRVNDEPSRLFYV YGTPDADTGLGLYGYPGGYLSTARGWIWDNRLDGTFKLFGRDQKLTVGVQRTAAKFGYLTYPVATTDPAWGALPSLQSGW DGSEVAYPAFGDPVESARINDRQWRVRAATDLELTDRIGLILGANYVDVQTTGFTFGVSAARSESAVSPFVGATFKVVPG VNFYASYSDIFNPQKELGTDLRPVGSAKGKSWEAGLKGETPDKALFGSVALFRSEQSNLAESSGYDADLGQTLYTGIFVR SQGIEAEIGGRIASGLTLQGGVTHLSLEGRDGAPVRTYVPRTTANLLLRWEPVEKLQLGAALRWQDDISTTNTLGTIRQG DYATLQLQAGYKLTDYVSFNLNVANVTNHKHLASLYWDQSFYAPPRSVTGSIRMTF
Sequences:
>Translated_696_residues MLHRFEILSAVSLAAIALNATAAHADEAEDTENRITVIGDRAEGVASGATGLPLAIVDTPQSVTVIDRGVLDDFAFDEVN DVLRYVTGVNVEEAETDRTYYNARGFDITEAMVDGIQLPNIWGPSIGSLDTVMWDSIEVVRGANGLLSGVGNPSGTINYR RKHSTGERRISGELTASSWNRMRGEFDIDMPLTADGNWGVRIAGAAQNADSYLRDYRSSRTAIQAVVDGRLSDSLAVSFG YARQQGTSRGVLWGALPLLDSAGNQLDWDVPTSTTQDWTYWKNSDQTAFGEATWTFAPGWSVRTHLTRRVNDEPSRLFYV YGTPDADTGLGLYGYPGGYLSTARGWIWDNRLDGTFKLFGRDQKLTVGVQRTAAKFGYLTYPVATTDPAWGALPSLQSGW DGSEVAYPAFGDPVESARINDRQWRVRAATDLELTDRIGLILGANYVDVQTTGFTFGVSAARSESAVSPFVGATFKVVPG VNFYASYSDIFNPQKELGTDLRPVGSAKGKSWEAGLKGETPDKALFGSVALFRSEQSNLAESSGYDADLGQTLYTGIFVR SQGIEAEIGGRIASGLTLQGGVTHLSLEGRDGAPVRTYVPRTTANLLLRWEPVEKLQLGAALRWQDDISTTNTLGTIRQG DYATLQLQAGYKLTDYVSFNLNVANVTNHKHLASLYWDQSFYAPPRSVTGSIRMTF >Mature_696_residues MLHRFEILSAVSLAAIALNATAAHADEAEDTENRITVIGDRAEGVASGATGLPLAIVDTPQSVTVIDRGVLDDFAFDEVN DVLRYVTGVNVEEAETDRTYYNARGFDITEAMVDGIQLPNIWGPSIGSLDTVMWDSIEVVRGANGLLSGVGNPSGTINYR RKHSTGERRISGELTASSWNRMRGEFDIDMPLTADGNWGVRIAGAAQNADSYLRDYRSSRTAIQAVVDGRLSDSLAVSFG YARQQGTSRGVLWGALPLLDSAGNQLDWDVPTSTTQDWTYWKNSDQTAFGEATWTFAPGWSVRTHLTRRVNDEPSRLFYV YGTPDADTGLGLYGYPGGYLSTARGWIWDNRLDGTFKLFGRDQKLTVGVQRTAAKFGYLTYPVATTDPAWGALPSLQSGW DGSEVAYPAFGDPVESARINDRQWRVRAATDLELTDRIGLILGANYVDVQTTGFTFGVSAARSESAVSPFVGATFKVVPG VNFYASYSDIFNPQKELGTDLRPVGSAKGKSWEAGLKGETPDKALFGSVALFRSEQSNLAESSGYDADLGQTLYTGIFVR SQGIEAEIGGRIASGLTLQGGVTHLSLEGRDGAPVRTYVPRTTANLLLRWEPVEKLQLGAALRWQDDISTTNTLGTIRQG DYATLQLQAGYKLTDYVSFNLNVANVTNHKHLASLYWDQSFYAPPRSVTGSIRMTF
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=732, Percent_Identity=28.8251366120219, Blast_Score=257, Evalue=2e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 75733; Mature: 75733
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHRFEILSAVSLAAIALNATAAHADEAEDTENRITVIGDRAEGVASGATGLPLAIVDTP CCCHHHHHHHHHHHHHEEECHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC QSVTVIDRGVLDDFAFDEVNDVLRYVTGVNVEEAETDRTYYNARGFDITEAMVDGIQLPN CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHCCEECCC IWGPSIGSLDTVMWDSIEVVRGANGLLSGVGNPSGTINYRRKHSTGERRISGELTASSWN CCCCCCCCCHHHHHCCHHHHHCCCHHHHCCCCCCCCEEEEECCCCCCEEECCEEECCHHH RMRGEFDIDMPLTADGNWGVRIAGAAQNADSYLRDYRSSRTAIQAVVDGRLSDSLAVSFG HCCCCEECCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC YARQQGTSRGVLWGALPLLDSAGNQLDWDVPTSTTQDWTYWKNSDQTAFGEATWTFAPGW HHHHCCCCCCEEEEHHHHHHCCCCEEECCCCCCCCCCCEEECCCCCCEECCEEEEECCCC SVRTHLTRRVNDEPSRLFYVYGTPDADTGLGLYGYPGGYLSTARGWIWDNRLDGTFKLFG CHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECCCCCCHHHCCCCCEECCCCCCEEEEEC RDQKLTVGVQRTAAKFGYLTYPVATTDPAWGALPSLQSGWDGSEVAYPAFGDPVESARIN CCCEEEEEHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCC DRQWRVRAATDLELTDRIGLILGANYVDVQTTGFTFGVSAARSESAVSPFVGATFKVVPG CCEEEEEEECCCEECCCEEEEEECCEEEEEECCEEEECCCCCCCCCCCCHHCCEEEEECC VNFYASYSDIFNPQKELGTDLRPVGSAKGKSWEAGLKGETPDKALFGSVALFRSEQSNLA CCEEECHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCHHHHH ESSGYDADLGQTLYTGIFVRSQGIEAEIGGRIASGLTLQGGVTHLSLEGRDGAPVRTYVP HCCCCCCHHHHHHHHEEEEECCCCCHHCCCEEECCEEEECCEEEEEEECCCCCCEEEECC RTTANLLLRWEPVEKLQLGAALRWQDDISTTNTLGTIRQGDYATLQLQAGYKLTDYVSFN CCCEEEEEEECCHHHHHHCCEEEECCCCCCCCCCCCEECCCEEEEEEECCCEEEEEEEEE LNVANVTNHKHLASLYWDQSFYAPPRSVTGSIRMTF EEEEECCCCHHHHHEEECCCCCCCCCCCCCCEEEEC >Mature Secondary Structure MLHRFEILSAVSLAAIALNATAAHADEAEDTENRITVIGDRAEGVASGATGLPLAIVDTP CCCHHHHHHHHHHHHHEEECHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC QSVTVIDRGVLDDFAFDEVNDVLRYVTGVNVEEAETDRTYYNARGFDITEAMVDGIQLPN CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHCCEECCC IWGPSIGSLDTVMWDSIEVVRGANGLLSGVGNPSGTINYRRKHSTGERRISGELTASSWN CCCCCCCCCHHHHHCCHHHHHCCCHHHHCCCCCCCCEEEEECCCCCCEEECCEEECCHHH RMRGEFDIDMPLTADGNWGVRIAGAAQNADSYLRDYRSSRTAIQAVVDGRLSDSLAVSFG HCCCCEECCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC YARQQGTSRGVLWGALPLLDSAGNQLDWDVPTSTTQDWTYWKNSDQTAFGEATWTFAPGW HHHHCCCCCCEEEEHHHHHHCCCCEEECCCCCCCCCCCEEECCCCCCEECCEEEEECCCC SVRTHLTRRVNDEPSRLFYVYGTPDADTGLGLYGYPGGYLSTARGWIWDNRLDGTFKLFG CHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECCCCCCHHHCCCCCEECCCCCCEEEEEC RDQKLTVGVQRTAAKFGYLTYPVATTDPAWGALPSLQSGWDGSEVAYPAFGDPVESARIN CCCEEEEEHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCC DRQWRVRAATDLELTDRIGLILGANYVDVQTTGFTFGVSAARSESAVSPFVGATFKVVPG CCEEEEEEECCCEECCCEEEEEECCEEEEEECCEEEECCCCCCCCCCCCHHCCEEEEECC VNFYASYSDIFNPQKELGTDLRPVGSAKGKSWEAGLKGETPDKALFGSVALFRSEQSNLA CCEEECHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEECCHHHHH ESSGYDADLGQTLYTGIFVRSQGIEAEIGGRIASGLTLQGGVTHLSLEGRDGAPVRTYVP HCCCCCCHHHHHHHHEEEEECCCCCHHCCCEEECCEEEECCEEEEEEECCCCCCEEEECC RTTANLLLRWEPVEKLQLGAALRWQDDISTTNTLGTIRQGDYATLQLQAGYKLTDYVSFN CCCEEEEEEECCHHHHHHCCEEEECCCCCCCCCCCCEECCCEEEEEEECCCEEEEEEEEE LNVANVTNHKHLASLYWDQSFYAPPRSVTGSIRMTF EEEEECCCCHHHHHEEECCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]