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The map label for this gene is rutD [H]

Identifier: 87199552

GI number: 87199552

Start: 1579840

End: 1580724

Strand: Reverse

Name: rutD [H]

Synonym: Saro_1534

Alternate gene names: 87199552

Gene position: 1580724-1579840 (Counterclockwise)

Preceding gene: 87199557

Following gene: 87199550

Centisome position: 44.38

GC content: 61.47

Gene sequence:

>885_bases
ATGCCTTTCGCAACCAACCCGCCTGCAAGCATTTTCTATGAACGCATGGCCGAGGGTGATGGCCCGGCGGTAATCATGCT
TGCAGGTGCGGGGCGCCCCTCGACCGACTTCGACAACACCTTCTACGCCCCCCTGGTATCGGCAGGCTTCGTACCCATCC
GCATAGACCATCGAGACACCGGACGTTCGACGGCGCTGGTCGACCAAAAGCCCGACCTCCATGCAATCAAGGCAGGAGCA
CTTGGAGCAGGCAGCACTCCGCCTCCCTACAGTATCGCCGATATGGCACACGATGTGCTGGCAGTGATGGATGCGGAAGG
AATTGAGGCTGCACATTTCGCCGGGCGGTCGATCGGCGGGCTGGTTGCGCAACAACTGGCAGTACTTCATCCTCAGCGGG
TACTTAGCCTGGCGTTGGTCATGGCAATGTGCCGGTCGATGGCCGACGTGGTCACCGATGCTGCGCTCGATCGGCTTATG
GCCGAGGGATCACTCGACGAAGAGGCCTACGTCGCCCGGCAATTGGGCGTGGCAAAAGCGAATTGTATGGCTGAAGACTA
TGACGAGGATCGCGTCGTCGAGGGTGCCCGGATTGCCTGGCGCCGCGGCGTGCATCCAGGAGGCACCGCACGGCACTTTG
CCGCCATTATTGCGGCGCCCGATCTGCGAGAGGCGCTTGGCACGCTTCCCGTGCCGACCCTGATCCTTCACGGCAGGCAC
GACAAAGTCATTCCGCTCGACAAGGCCAAGGAAACTGCAGAAGCGATCCCGGGTGCCACGATCGAAGTTGATGATACGAT
GGGCCATGATGGGCCACCGCGCCTCCGGAAAAGCTGGGGCGAGAGGATCGCTGCACATCTGCAGGCGATACAGACCGCAG
TCTGA

Upstream 100 bases:

>100_bases
GGAGCAACAATCAAAATGCTGATTTACGGAGCGATTGCCCGGTCCAATTCGTGCCTCAAGATTTACTTCATCATAAGGCA
GGCTGAGGAGATTATTCATC

Downstream 100 bases:

>100_bases
GTACCGGAGCTTCGGTAGGCCGTAAATAAGCAGGTCTGCCGGCTAAAACACACCCTTCCCGCTCGAATTTTATTTCCGGA
GATCGGGCAGGTCGTTCCGC

Product: alpha/beta hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MPFATNPPASIFYERMAEGDGPAVIMLAGAGRPSTDFDNTFYAPLVSAGFVPIRIDHRDTGRSTALVDQKPDLHAIKAGA
LGAGSTPPPYSIADMAHDVLAVMDAEGIEAAHFAGRSIGGLVAQQLAVLHPQRVLSLALVMAMCRSMADVVTDAALDRLM
AEGSLDEEAYVARQLGVAKANCMAEDYDEDRVVEGARIAWRRGVHPGGTARHFAAIIAAPDLREALGTLPVPTLILHGRH
DKVIPLDKAKETAEAIPGATIEVDDTMGHDGPPRLRKSWGERIAAHLQAIQTAV

Sequences:

>Translated_294_residues
MPFATNPPASIFYERMAEGDGPAVIMLAGAGRPSTDFDNTFYAPLVSAGFVPIRIDHRDTGRSTALVDQKPDLHAIKAGA
LGAGSTPPPYSIADMAHDVLAVMDAEGIEAAHFAGRSIGGLVAQQLAVLHPQRVLSLALVMAMCRSMADVVTDAALDRLM
AEGSLDEEAYVARQLGVAKANCMAEDYDEDRVVEGARIAWRRGVHPGGTARHFAAIIAAPDLREALGTLPVPTLILHGRH
DKVIPLDKAKETAEAIPGATIEVDDTMGHDGPPRLRKSWGERIAAHLQAIQTAV
>Mature_293_residues
PFATNPPASIFYERMAEGDGPAVIMLAGAGRPSTDFDNTFYAPLVSAGFVPIRIDHRDTGRSTALVDQKPDLHAIKAGAL
GAGSTPPPYSIADMAHDVLAVMDAEGIEAAHFAGRSIGGLVAQQLAVLHPQRVLSLALVMAMCRSMADVVTDAALDRLMA
EGSLDEEAYVARQLGVAKANCMAEDYDEDRVVEGARIAWRRGVHPGGTARHFAAIIAAPDLREALGTLPVPTLILHGRHD
KVIPLDKAKETAEAIPGATIEVDDTMGHDGPPRLRKSWGERIAAHLQAIQTAV

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 31185; Mature: 31054

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFATNPPASIFYERMAEGDGPAVIMLAGAGRPSTDFDNTFYAPLVSAGFVPIRIDHRDT
CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCEEEEECCCCC
GRSTALVDQKPDLHAIKAGALGAGSTPPPYSIADMAHDVLAVMDAEGIEAAHFAGRSIGG
CCCEEEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHH
LVAQQLAVLHPQRVLSLALVMAMCRSMADVVTDAALDRLMAEGSLDEEAYVARQLGVAKA
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHH
NCMAEDYDEDRVVEGARIAWRRGVHPGGTARHFAAIIAAPDLREALGTLPVPTLILHGRH
HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEECCC
DKVIPLDKAKETAEAIPGATIEVDDTMGHDGPPRLRKSWGERIAAHLQAIQTAV
CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PFATNPPASIFYERMAEGDGPAVIMLAGAGRPSTDFDNTFYAPLVSAGFVPIRIDHRDT
CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCEEEEECCCCC
GRSTALVDQKPDLHAIKAGALGAGSTPPPYSIADMAHDVLAVMDAEGIEAAHFAGRSIGG
CCCEEEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHH
LVAQQLAVLHPQRVLSLALVMAMCRSMADVVTDAALDRLMAEGSLDEEAYVARQLGVAKA
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHH
NCMAEDYDEDRVVEGARIAWRRGVHPGGTARHFAAIIAAPDLREALGTLPVPTLILHGRH
HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEEECCC
DKVIPLDKAKETAEAIPGATIEVDDTMGHDGPPRLRKSWGERIAAHLQAIQTAV
CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA