Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is cbdB [H]

Identifier: 87198563

GI number: 87198563

Start: 588893

End: 589378

Strand: Direct

Name: cbdB [H]

Synonym: Saro_0539

Alternate gene names: 87198563

Gene position: 588893-589378 (Clockwise)

Preceding gene: 87198562

Following gene: 87198564

Centisome position: 16.53

GC content: 59.47

Gene sequence:

>486_bases
ATGAGCGCGCTCGATGAAGTCTGCGCCTTCCTCCACCGCGAGGCGCGCCTGCTCGATGACCGGCAGTTGGATGTCTGGCT
GGAATGCTATGCGCCCGATTGCACCTACTGGATGCCAGCCTGGACCGACGATGACGAGCTGGTCACCGATCCGCAGAGCC
AGATCTCATTGATCTACTACGCCAACCGGCAGGGGTTGGAGGACCGCGTCTACCGGCTCGAGACAGAGCGTTCCAGCGCC
AGCACGCCTGAGCCGCGCACTGTCCACATGCTTGCGAATATCGAACTGCTGGAAGATCGCGGGGACGAACTGGACGTGCG
ATACAACTGGCACACGCTCAGCCATCGTTTCAAGGTGACCAGCCAGTTCTTTGGCGTGACCTTCTGCACGCTGCGACGGA
GCATGGACGGCTTCAGCATTGGCTCCAAGAAGGTCGTGCTGAAGAACGACTACATCCACCAGGTGATCGATGTCTATCAT
GTCTGA

Upstream 100 bases:

>100_bases
TCAGCAGCGAGCGCAGCGAGGATGAAGGCTTGTTCGTCCGCCAGCACGAATACTGGGCGAAGACCCTTCTCGAAGGCCTG
GCCCGGCAGGAGGAAATGGC

Downstream 100 bases:

>100_bases
GTACGGGGCGCATTTCGCGGGTCGTTTTGACGGCAAGGTCATGGTCGTGACCGGGGCGGCGCAGGGGATCGGGCGCGGCG
TGGCGGAGCGCGCGGCTGCC

Product: 2-chlorobenzoate 1,2-dioxygenase

Products: NA

Alternate protein names: 2-chlorobenzoate 1,2-dioxygenase [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSALDEVCAFLHREARLLDDRQLDVWLECYAPDCTYWMPAWTDDDELVTDPQSQISLIYYANRQGLEDRVYRLETERSSA
STPEPRTVHMLANIELLEDRGDELDVRYNWHTLSHRFKVTSQFFGVTFCTLRRSMDGFSIGSKKVVLKNDYIHQVIDVYH
V

Sequences:

>Translated_161_residues
MSALDEVCAFLHREARLLDDRQLDVWLECYAPDCTYWMPAWTDDDELVTDPQSQISLIYYANRQGLEDRVYRLETERSSA
STPEPRTVHMLANIELLEDRGDELDVRYNWHTLSHRFKVTSQFFGVTFCTLRRSMDGFSIGSKKVVLKNDYIHQVIDVYH
V
>Mature_160_residues
SALDEVCAFLHREARLLDDRQLDVWLECYAPDCTYWMPAWTDDDELVTDPQSQISLIYYANRQGLEDRVYRLETERSSAS
TPEPRTVHMLANIELLEDRGDELDVRYNWHTLSHRFKVTSQFFGVTFCTLRRSMDGFSIGSKKVVLKNDYIHQVIDVYHV

Specific function: Component of 2-halobenzoate dioxygenase multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into 2-halobenzoate to form catechol [H]

COG id: COG5517

COG function: function code Q; Small subunit of phenylpropionate dioxygenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017641
- InterPro:   IPR000391 [H]

Pfam domain/function: PF00866 Ring_hydroxyl_B [H]

EC number: =1.14.12.13 [H]

Molecular weight: Translated: 18941; Mature: 18810

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALDEVCAFLHREARLLDDRQLDVWLECYAPDCTYWMPAWTDDDELVTDPQSQISLIYY
CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCCCCCEECCHHHEEEEEE
ANRQGLEDRVYRLETERSSASTPEPRTVHMLANIELLEDRGDELDVRYNWHTLSHRFKVT
ECCCCCHHHHEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCEEEEH
SQFFGVTFCTLRRSMDGFSIGSKKVVLKNDYIHQVIDVYHV
HHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHCC
>Mature Secondary Structure 
SALDEVCAFLHREARLLDDRQLDVWLECYAPDCTYWMPAWTDDDELVTDPQSQISLIYY
CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCCCCCEECCHHHEEEEEE
ANRQGLEDRVYRLETERSSASTPEPRTVHMLANIELLEDRGDELDVRYNWHTLSHRFKVT
ECCCCCHHHHEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCEEEEH
SQFFGVTFCTLRRSMDGFSIGSKKVVLKNDYIHQVIDVYHV
HHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7530709; 1370284 [H]