Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198431
Identifier: 87198431
GI number: 87198431
Start: 445149
End: 446018
Strand: Direct
Name: 87198431
Synonym: Saro_0406
Alternate gene names: NA
Gene position: 445149-446018 (Clockwise)
Preceding gene: 87198429
Following gene: 87198433
Centisome position: 12.5
GC content: 62.41
Gene sequence:
>870_bases ATGCCGGCGTTGTCCCCCATGTCTCCCTCTTTCCACACAAGGCAAGGGAAGCTTGCCGTCCTGGTAGGGTTGGCAGCATT GATCATGAGCGGGTGCAGCAGCAATGTGCCCGGCGAAGATCAAGCTGCGCCTAGCGACGCTGCAAGCGAGAATGTGTCAG AAGTTGCGCCAGGGCAGCCAACTGAAGCTACGCGGCTGGCCCCGATCGGTCGGATTGATCTGATCGCAGCATTTGGCCGG GCCAGCGATGCGGTAGCGGCTGGGCAAGCACTCCCCGATGCCAACCGCCAGCTGGTTGGCAGGACATTCAGTCTGAAGTT GCCATTTGGCTGCGACGGCGAAGCGGACAAGGAACGTCCGGCCTGGGCAGGCTGGACGCTTGATCGGAACCGGCAGGCCC TCAAACTGTCTGCGGCCCCTGAACGCTGGACTGATGCCGCTTGGGCAAAATCCATTGCCGGTGACATGGCTCACGAAGCC GTGGAGGGGTTCTGGATTGAACGGCCTTGGACCAGCAGCGAAGAATGTCCGGCTGGCAATCCGGCAAGCGAAAGTGGCCT TCCCGCCTCGGACGAACGCCAGACCATGGGCATTGCTCAGTTCTTCGCTCCGGATTCGCCCCGGACTTTCCAGCGCGGAT CGCGGCCCTACGCGCACACAATCCGGGTTCGGGAGCCAGCAGATGTCGAAGGCCGCACCTACCGATTTGCCGTAAGCGGA CGGGTAACGGGATTTCCCGACGGCCAGCCCATCCACTGCGTGCAGGATGCGCCTGATCGACGTCCTGTCTGCCTTATGGC GGTAGAACTGGCGCGGGTCTCTTTCGAGGACCCGCGCGACGGAACCGTCCTTGTGGAGTGGCGGAATTAG
Upstream 100 bases:
>100_bases CAATTCAGCAATCGCAAGGCTGTTAGCGCGGGCCATTTTTTGTGTGGTTGATTTCGCGAAAGGGTTCAATTTCTGTGCCG TGATCTGCTAGCCATCAAGA
Downstream 100 bases:
>100_bases CCCGGACGGGAGCTTGGCTTATTGCCGCAGCTTGCCTTCGATCGCCTCGACATCGCCGTCCTGTTCAATTTCGCGATCGA TTTCAGTCTCGGCCTGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPALSPMSPSFHTRQGKLAVLVGLAALIMSGCSSNVPGEDQAAPSDAASENVSEVAPGQPTEATRLAPIGRIDLIAAFGR ASDAVAAGQALPDANRQLVGRTFSLKLPFGCDGEADKERPAWAGWTLDRNRQALKLSAAPERWTDAAWAKSIAGDMAHEA VEGFWIERPWTSSEECPAGNPASESGLPASDERQTMGIAQFFAPDSPRTFQRGSRPYAHTIRVREPADVEGRTYRFAVSG RVTGFPDGQPIHCVQDAPDRRPVCLMAVELARVSFEDPRDGTVLVEWRN
Sequences:
>Translated_289_residues MPALSPMSPSFHTRQGKLAVLVGLAALIMSGCSSNVPGEDQAAPSDAASENVSEVAPGQPTEATRLAPIGRIDLIAAFGR ASDAVAAGQALPDANRQLVGRTFSLKLPFGCDGEADKERPAWAGWTLDRNRQALKLSAAPERWTDAAWAKSIAGDMAHEA VEGFWIERPWTSSEECPAGNPASESGLPASDERQTMGIAQFFAPDSPRTFQRGSRPYAHTIRVREPADVEGRTYRFAVSG RVTGFPDGQPIHCVQDAPDRRPVCLMAVELARVSFEDPRDGTVLVEWRN >Mature_288_residues PALSPMSPSFHTRQGKLAVLVGLAALIMSGCSSNVPGEDQAAPSDAASENVSEVAPGQPTEATRLAPIGRIDLIAAFGRA SDAVAAGQALPDANRQLVGRTFSLKLPFGCDGEADKERPAWAGWTLDRNRQALKLSAAPERWTDAAWAKSIAGDMAHEAV EGFWIERPWTSSEECPAGNPASESGLPASDERQTMGIAQFFAPDSPRTFQRGSRPYAHTIRVREPADVEGRTYRFAVSGR VTGFPDGQPIHCVQDAPDRRPVCLMAVELARVSFEDPRDGTVLVEWRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31078; Mature: 30947
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALSPMSPSFHTRQGKLAVLVGLAALIMSGCSSNVPGEDQAAPSDAASENVSEVAPGQP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCC TEATRLAPIGRIDLIAAFGRASDAVAAGQALPDANRQLVGRTFSLKLPFGCDGEADKERP CCCHHCCCCCCCHHHHHHCCCCHHHHHCCCCCCCCHHHHCEEEEEECCCCCCCCCCCCCC AWAGWTLDRNRQALKLSAAPERWTDAAWAKSIAGDMAHEAVEGFWIERPWTSSEECPAGN CEECCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCC PASESGLPASDERQTMGIAQFFAPDSPRTFQRGSRPYAHTIRVREPADVEGRTYRFAVSG CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECC RVTGFPDGQPIHCVQDAPDRRPVCLMAVELARVSFEDPRDGTVLVEWRN EECCCCCCCCEEEECCCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECC >Mature Secondary Structure PALSPMSPSFHTRQGKLAVLVGLAALIMSGCSSNVPGEDQAAPSDAASENVSEVAPGQP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCC TEATRLAPIGRIDLIAAFGRASDAVAAGQALPDANRQLVGRTFSLKLPFGCDGEADKERP CCCHHCCCCCCCHHHHHHCCCCHHHHHCCCCCCCCHHHHCEEEEEECCCCCCCCCCCCCC AWAGWTLDRNRQALKLSAAPERWTDAAWAKSIAGDMAHEAVEGFWIERPWTSSEECPAGN CEECCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCC PASESGLPASDERQTMGIAQFFAPDSPRTFQRGSRPYAHTIRVREPADVEGRTYRFAVSG CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECC RVTGFPDGQPIHCVQDAPDRRPVCLMAVELARVSFEDPRDGTVLVEWRN EECCCCCCCCEEEECCCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA