Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198429
Identifier: 87198429
GI number: 87198429
Start: 443284
End: 443673
Strand: Direct
Name: 87198429
Synonym: Saro_0404
Alternate gene names: NA
Gene position: 443284-443673 (Clockwise)
Preceding gene: 87198428
Following gene: 87198431
Centisome position: 12.45
GC content: 55.38
Gene sequence:
>390_bases ATGTCTTATTACTTCTCGAAAACCGTCAGCGCGCCATTGGATGAAACTGTCACTCAGGTCCGAAATGCGCTGGCTGATCA GGGCTTCGGGGTGATTACCGATATCGACATGGCAAAGACTCTCCGTGACAAAATCGACGTCGAATTCAGACCATATCGAA TTCTCGGCGCTTGCAACCCGAAGCTGGCCTATGAAGCCCTGCAGGTGGAGGACAAGGTGGGGACTATGCTGCCGTGCAAT GTCATCGTTCAGGAGTTCGCTCCGGGACGCTGCGAGGTCGCTGCAATCGATCCGGTCGCTTCGATGTCTGCCATCGACAA CCCGGCCCTCCAATCAGCCGCGCAAGCGGTGCAACAGCGGTTACGCTTGGTAATCGAAGCAATTGGCTAG
Upstream 100 bases:
>100_bases GACCGCCCGGATAGCTCTGCCGAGCCGGAGTCCGGAACCAAGGCGCAGCGGGATATTGCTGGGAAGACAGTGATTATTTG ATCAGCACGGAGCAACTGCG
Downstream 100 bases:
>100_bases CTGGTTGTCGCGCTGCTCAGAATGGGAAAAACCAGTGAATCGCCGCAACAGCGACGACCCAGGTCACCAGGTTCAACGGT AGCCCGACCTTGACGAAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MSYYFSKTVSAPLDETVTQVRNALADQGFGVITDIDMAKTLRDKIDVEFRPYRILGACNPKLAYEALQVEDKVGTMLPCN VIVQEFAPGRCEVAAIDPVASMSAIDNPALQSAAQAVQQRLRLVIEAIG
Sequences:
>Translated_129_residues MSYYFSKTVSAPLDETVTQVRNALADQGFGVITDIDMAKTLRDKIDVEFRPYRILGACNPKLAYEALQVEDKVGTMLPCN VIVQEFAPGRCEVAAIDPVASMSAIDNPALQSAAQAVQQRLRLVIEAIG >Mature_128_residues SYYFSKTVSAPLDETVTQVRNALADQGFGVITDIDMAKTLRDKIDVEFRPYRILGACNPKLAYEALQVEDKVGTMLPCNV IVQEFAPGRCEVAAIDPVASMSAIDNPALQSAAQAVQQRLRLVIEAIG
Specific function: Unknown
COG id: COG3439
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14047; Mature: 13916
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYYFSKTVSAPLDETVTQVRNALADQGFGVITDIDMAKTLRDKIDVEFRPYRILGACNP CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCCH KLAYEALQVEDKVGTMLPCNVIVQEFAPGRCEVAAIDPVASMSAIDNPALQSAAQAVQQR HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHH LRLVIEAIG HHHHHHHCC >Mature Secondary Structure SYYFSKTVSAPLDETVTQVRNALADQGFGVITDIDMAKTLRDKIDVEFRPYRILGACNP CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCCH KLAYEALQVEDKVGTMLPCNVIVQEFAPGRCEVAAIDPVASMSAIDNPALQSAAQAVQQR HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHH LRLVIEAIG HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA