Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is 87198315

Identifier: 87198315

GI number: 87198315

Start: 312028

End: 313980

Strand: Direct

Name: 87198315

Synonym: Saro_0290

Alternate gene names: NA

Gene position: 312028-313980 (Clockwise)

Preceding gene: 87198307

Following gene: 87198316

Centisome position: 8.76

GC content: 65.44

Gene sequence:

>1953_bases
ATGTTCAAGACGCTCGCGGCAGCACCGCTCCTTCTCGCCCTTTCCGTTTCAACTCAGGCTCTTGCGGCGAACTCTGCGCC
GATGGCCGTGCCGATCGCGCAGACCGTGCCGGACGCGCAGGACGTGGCCTATCCGGGCACAATGACGCTCGACATCGACG
CGTCGGACGTCGTGCGCGGGGCCTATCGCGTGACCCAGACCATTCCGGTGGTGGCGGGCGCGAAGGAGCTGATCCTGCTT
TACCCGCAGTGGCTGCCCGGCAACCACGGGCCGCGCGGGCCGCTGGCCGAACTCGTCGGCGTGCAGTTCTTCGTCGACGG
CAAGCCGGTGGAATGGAAGCGCGACCGGGTCGAGGTCTATGCCTTCCACGTCACCCTGCCGGCCGGCGCGAAGGAGGTCG
TGGCCAAGCTGATCCACACCTCGCCGCTGCAATCTTCGGAAGGGCGCATTACGATGACACCCGAGATGCTCAACCTGCAG
TGGGAGAAGATGAGCCTCTATCCCGCCGGTCACTATGTCCGCCGCATTCGCGTGAAGCCGACCGTAACCCTGCCGCAGGG
CTGGACGCCCGCCACCGCGCTCGACGGAATGAGCATGAGCGGCAACCGCGCGACCTGGGCCGAAACCGACTACGAGACGC
TGGTCGATTCGCCGATCTTCGCGGGCAAGAACTTCCGCAAGTGGGACCTCGGGCAGAACGTCACGCTCAACGTCGTCTCC
GACAAGCCGGAGCAGCTCGAGGCCAAGCCCGAGCATATCGCCGCGCACAAGGCGCTGGTCGAGGAAGCGCGGATCGCGTT
CGGCGCGAACCATTTCGACCACTACGAGTTCCTGCTGGCGCTGTCGGACAAGATCGGCGGCATCGGGCTGGAACATCACC
GGTCGAGCGAGAACCAGCTCGAACCCGAGGCCTTCACCGAATGGGCCAAGCAGGAATGGGACCGCAATCTGCTGCCGCAC
GAGTATTCGCACTCGTGGTCGGGCAAGTTCCGCCGTCCGTCGCGCCTGTGGACGCCCGACTATCGCCAGCCGATGCAGGG
CGACCTGCTGTGGACCTACGAAGGGCAGGACCAGTTCTGGGGCGCGGTGCTGGCCAGCCGTTCGGGCATGCAGGGCAAGG
ACATGGTGCTGGGCATGCTGGCGGCATGGGCGGGCGGCTTCACCCAGCAGCCGGGCCGCGAATGGCGTTCGGTCGAGGAT
ACCGGGTTCGACCCGGTCTTCGCCTCGCGCAAGCCGAAGCCCTACTCGTCGCTGGCCCGCAACGAGGACTACTACACCGA
AGGCGCGCTGGTCTGGCTGGAAATCGACCAGATCCTTCGCGAAGGCACCGGCGGCAAGAAGTCCATCGACGACTTCGCCA
AGTCGTTCTTCGGCATGAATCCGGGGGACTGGGGCCAGATCCCGTTCGAGGTGGACGAGATCGTCACCAAGCTGAACGCG
CTTTATCCCTATGACTGGGCCAAGCTGATCGACACCCGCATCAACCAGCCGGGCCAGCCCGCGCCGCTGAACGGGATCGA
GAAGGGCGGCTACAAGCTGGTCTGGAAGGAAGAGCCCAATCCCTACATGAAGGCGGCGATCGATTTCGGCAAAGGCCTGA
GCCTTTCCAACTCGATCGGCATTTCGCTCGACAAGGACGGCAAGGTCACCGGCACGCGCTGGGACAGCCCGGCCTTCAAT
GCGGGAATCGTGACCGGTACGCAGATCATGGCGGTGAACGGCACCGCCTATAGCGCGGATGACCTCAAGAAGGCGATCAC
CGCAGCCAAGGGTGACAAGGGCCAGCCGCTCGAACTGCTGGTCAAGCGCGGCAGCCGGTTCGAGACCGTGAAGCTCGATT
ACCGGGATGGCCTGCGTTATCCGTGGCTCGAGCGCGTGGCGCCGGGCAAGGCGCCGACCGGGCTCGACCTGCTGCTCGAA
CCCCGGCGCCCCGGCGCGGCGAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
GGTGCGCGCGATTAGCCCGAAAGGGACAAAACGGAAAGGTTGCAAAAAGGTGGCGGTGACTGGTTGCGGATGCGACCGCT
TCGCGTCATGACTGACACCC

Downstream 100 bases:

>100_bases
GGGCGTGGCGCGCGGCGGGGCAAAGCTGGGCAACCGGCTGGCACCCGCGCGCTTCGTGCTGTTTCTCGTGCTGCTGGTCG
CCGCGTTCGCCGGCGACCGG

Product: glycyl aminopeptidase

Products: NA

Alternate protein names: Peptidase M; Protease; Glycyl Aminopeptidase; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain Family Protein; Trypsin-Like Serine Protease; Protease With C-Terminal PDZ Domain-Containing Protein; Pdz/Dhr/Glgf; Aminopeptidase N Family Protein; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein; Protease With C-Terminal PDZ Domain

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL
YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ
WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS
DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH
EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED
TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA
LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN
AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE
PRRPGAAKKK

Sequences:

>Translated_650_residues
MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL
YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ
WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS
DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH
EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED
TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA
LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN
AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE
PRRPGAAKKK
>Mature_650_residues
MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL
YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ
WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS
DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH
EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED
TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA
LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN
AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE
PRRPGAAKKK

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72078; Mature: 72078

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRG
CCCHHHHHHHHEEEECCHHHHHCCCCCCEEEHHHHCCCHHHCCCCCEEEEECCHHHHHHH
AYRVTQTIPVVAGAKELILLYPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVY
HHHHHHHCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCEEEEECCCCCCCCCCEEEEE
AFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQWEKMSLYPAGHYVRRIRVKP
EEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHCEEEEEEEECCCCCEEEEEEECC
TVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS
EEECCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCEEEEEEC
DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQL
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCCHHCCCCCCCC
EPEAFTEWAKQEWDRNLLPHEYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFW
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
GAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVEDTGFDPVFASRKPKPYSSLAR
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHC
NEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA
CCCCEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIG
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC
ISLDKDGKVTGTRWDSPAFNAGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELL
EEECCCCCEECCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
VKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLEPRRPGAAKKK
HHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRG
CCCHHHHHHHHEEEECCHHHHHCCCCCCEEEHHHHCCCHHHCCCCCEEEEECCHHHHHHH
AYRVTQTIPVVAGAKELILLYPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVY
HHHHHHHCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCEEEEECCCCCCCCCCEEEEE
AFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQWEKMSLYPAGHYVRRIRVKP
EEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHCEEEEEEEECCCCCEEEEEEECC
TVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS
EEECCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCEEEEEEC
DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQL
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCCHHCCCCCCCC
EPEAFTEWAKQEWDRNLLPHEYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFW
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
GAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVEDTGFDPVFASRKPKPYSSLAR
HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHC
NEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA
CCCCEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIG
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC
ISLDKDGKVTGTRWDSPAFNAGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELL
EEECCCCCEECCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
VKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLEPRRPGAAKKK
HHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA