BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is phnK [H]

Identifier: 86751201

GI number: 86751201

Start: 4663297

End: 4664097

Strand: Direct

Name: phnK [H]

Synonym: RPB_4093

Alternate gene names: 86751201

Gene position: 4663297-4664097 (Clockwise)

Preceding gene: 86751200

Following gene: 86751202

Centisome position: 87.46

GC content: 68.16

Gene sequence:

>801_bases
ATGCCTGATCGCACCTCATCCTCTCGGTTCAATGAACCGCTGCTGATCGCCGAAGGCCTGGCCAAATCCTACGGCCGACT
GCAGGCGTGCCGCGATGTCTCGTTCACGCTGTATCCGGGCGAAGTGCTGGCGATCGTCGGCGAGAGCGGCTCCGGAAAGT
CGACGCTGCTGCAGATGCTGTCGGCGCAACTGCCGCCGAGCGCCGGCCGGGTCTCGTACCGGATGCGCGACGGCGTGCTG
CGTGATCTCGCGGCGCTCGGCGAAGCGGAGCGGCGGTTCCTGTTCCGCACCGATTGGGGCTATGTGCACCAGGATCCGGC
GCAGGGCCTTCGCATGGCGGTGTCGGCCGGCGCCAATGTCGGCGAGCGGCTGATGGCGGTCGGCTGGAATCACTACGGCC
GGATCCGCGACACCGCATCGTCCTGGCTGTCGCGCGTCGAGATCGGCCTGGACCGCATCGACGACGCGCCGCGGACTTAC
TCGGGCGGGATGCGGCAGCGGCTGCAGATCGCGCGCAATCTGGTGACCGAGCCGCGGCTGATGTTCATGGACGAGCCGAC
CGGCGGCCTCGACGTCTCGGTGCAGGCGCGGCTGCTCGATCTGTTGCGCGGCCTCGTCACCGACCTCGGGCTTGCGGCCA
TCGTCGTCACGCATGATCTCGCGGTCGCGCGCCTGTTGTCACATCGGGTGATGGTGATGCAGGGTGGCCGCGTGATCGAA
ACCGGCCTCACCGACCAGGTGCTCGACGACCCGCACGAGCCCTACACCCAGCTTCTCGTCGCCTCGATCCTGCCGCCATG
A

Upstream 100 bases:

>100_bases
GGCGGACGGATGTTCGTCTGCTCCGACACCGATTATTGCGAAACACGTCAGGTGCAAGGCCATCGCGGCAGCGAAAGCGC
GCCGCATCAGGAGCGCGCAG

Downstream 100 bases:

>100_bases
GCCCGCCGATGTCCGCGATGATCCAACTCACCAACGCCGAGAAGACCTTCGTCATGCACCTGCAGGGCGGCGTGCGGCTG
CCCGTGGTGCGCGGCGTCTC

Product: phosphonate C-P lyase system protein PhnK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MPDRTSSSRFNEPLLIAEGLAKSYGRLQACRDVSFTLYPGEVLAIVGESGSGKSTLLQMLSAQLPPSAGRVSYRMRDGVL
RDLAALGEAERRFLFRTDWGYVHQDPAQGLRMAVSAGANVGERLMAVGWNHYGRIRDTASSWLSRVEIGLDRIDDAPRTY
SGGMRQRLQIARNLVTEPRLMFMDEPTGGLDVSVQARLLDLLRGLVTDLGLAAIVVTHDLAVARLLSHRVMVMQGGRVIE
TGLTDQVLDDPHEPYTQLLVASILPP

Sequences:

>Translated_266_residues
MPDRTSSSRFNEPLLIAEGLAKSYGRLQACRDVSFTLYPGEVLAIVGESGSGKSTLLQMLSAQLPPSAGRVSYRMRDGVL
RDLAALGEAERRFLFRTDWGYVHQDPAQGLRMAVSAGANVGERLMAVGWNHYGRIRDTASSWLSRVEIGLDRIDDAPRTY
SGGMRQRLQIARNLVTEPRLMFMDEPTGGLDVSVQARLLDLLRGLVTDLGLAAIVVTHDLAVARLLSHRVMVMQGGRVIE
TGLTDQVLDDPHEPYTQLLVASILPP
>Mature_265_residues
PDRTSSSRFNEPLLIAEGLAKSYGRLQACRDVSFTLYPGEVLAIVGESGSGKSTLLQMLSAQLPPSAGRVSYRMRDGVLR
DLAALGEAERRFLFRTDWGYVHQDPAQGLRMAVSAGANVGERLMAVGWNHYGRIRDTASSWLSRVEIGLDRIDDAPRTYS
GGMRQRLQIARNLVTEPRLMFMDEPTGGLDVSVQARLLDLLRGLVTDLGLAAIVVTHDLAVARLLSHRVMVMQGGRVIET
GLTDQVLDDPHEPYTQLLVASILPP

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4107

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=231, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9665248, Length=224, Percent_Identity=27.6785714285714, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI31657092, Length=247, Percent_Identity=27.5303643724696, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI45446740, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI47078218, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI62526033, Length=170, Percent_Identity=34.7058823529412, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=222, Percent_Identity=29.2792792792793, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=25.1162790697674, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592964, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592978, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592956, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592971, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592915, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592898, Length=214, Percent_Identity=29.9065420560748, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI150417984, Length=227, Percent_Identity=28.1938325991189, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=63.921568627451, Blast_Score=323, Evalue=8e-90,
Organism=Escherichia coli, GI1789962, Length=268, Percent_Identity=35.8208955223881, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1787500, Length=241, Percent_Identity=34.4398340248963, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789963, Length=235, Percent_Identity=35.3191489361702, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787758, Length=244, Percent_Identity=35.655737704918, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI145693107, Length=254, Percent_Identity=34.251968503937, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1788506, Length=269, Percent_Identity=35.6877323420074, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI48994883, Length=244, Percent_Identity=35.2459016393443, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87081791, Length=261, Percent_Identity=30.6513409961686, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=34.6846846846847, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787759, Length=258, Percent_Identity=32.9457364341085, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081834, Length=234, Percent_Identity=38.034188034188, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789032, Length=250, Percent_Identity=32, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=28.1746031746032, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=30.1255230125523, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787548, Length=247, Percent_Identity=29.9595141700405, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=31.8367346938775, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=30.3030303030303, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=29.8319327731092, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787370, Length=258, Percent_Identity=27.1317829457364, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=28.6290322580645, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790525, Length=242, Percent_Identity=26.4462809917355, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=30.1255230125523, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786872, Length=256, Percent_Identity=29.6875, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=32.8828828828829, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=29.5652173913043, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=28.2051282051282, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790467, Length=234, Percent_Identity=28.6324786324786, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=24.8031496062992, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=32.0833333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788644, Length=246, Percent_Identity=31.3008130081301, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=34.7222222222222, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=32.2033898305085, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787792, Length=240, Percent_Identity=28.75, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=30.5936073059361, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1786563, Length=231, Percent_Identity=29.8701298701299, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=29.3333333333333, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788210, Length=256, Percent_Identity=28.515625, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=27.4336283185841, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=29.2, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=27.3109243697479, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=27.0042194092827, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.9414225941423, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787164, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=29.8319327731092, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790544, Length=254, Percent_Identity=27.9527559055118, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI48995001, Length=229, Percent_Identity=26.6375545851528, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=28.8, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790534, Length=210, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=30.4166666666667, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=31.7391304347826, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=27.4881516587678, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787182, Length=241, Percent_Identity=26.1410788381743, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=227, Percent_Identity=29.0748898678414, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=238, Percent_Identity=28.9915966386555, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71992290, Length=236, Percent_Identity=29.6610169491525, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17565938, Length=242, Percent_Identity=26.4462809917355, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=246, Percent_Identity=29.6747967479675, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI115534520, Length=253, Percent_Identity=27.6679841897233, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=223, Percent_Identity=29.5964125560538, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=223, Percent_Identity=29.5964125560538, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=223, Percent_Identity=29.5964125560538, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=231, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.6595744680851, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=27.5555555555556, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17511077, Length=242, Percent_Identity=29.3388429752066, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=30.0884955752212, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI85726357, Length=280, Percent_Identity=25.3571428571429, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076682, Length=215, Percent_Identity=33.4883720930233, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076684, Length=215, Percent_Identity=33.4883720930233, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581617, Length=215, Percent_Identity=33.4883720930233, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581615, Length=215, Percent_Identity=33.4883720930233, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI23397593, Length=240, Percent_Identity=27.9166666666667, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI85724864, Length=221, Percent_Identity=31.2217194570136, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24580555, Length=221, Percent_Identity=31.2217194570136, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI85816269, Length=221, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24580553, Length=221, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24659289, Length=230, Percent_Identity=29.1304347826087, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=31.0810810810811, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17136662, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574150, Length=234, Percent_Identity=26.0683760683761, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007328, Length=234, Percent_Identity=26.0683760683761, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28574744, Length=181, Percent_Identity=29.8342541436464, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012700
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 29195; Mature: 29064

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRTSSSRFNEPLLIAEGLAKSYGRLQACRDVSFTLYPGEVLAIVGESGSGKSTLLQML
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHHHH
SAQLPPSAGRVSYRMRDGVLRDLAALGEAERRFLFRTDWGYVHQDPAQGLRMAVSAGANV
HHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCHHHHHHHHHHCCCCH
GERLMAVGWNHYGRIRDTASSWLSRVEIGLDRIDDAPRTYSGGMRQRLQIARNLVTEPRL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHCCCCE
MFMDEPTGGLDVSVQARLLDLLRGLVTDLGLAAIVVTHDLAVARLLSHRVMVMQGGRVIE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEE
TGLTDQVLDDPHEPYTQLLVASILPP
CCCCHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PDRTSSSRFNEPLLIAEGLAKSYGRLQACRDVSFTLYPGEVLAIVGESGSGKSTLLQML
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCCCHHHHHHHH
SAQLPPSAGRVSYRMRDGVLRDLAALGEAERRFLFRTDWGYVHQDPAQGLRMAVSAGANV
HHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCHHHHHHHHHHCCCCH
GERLMAVGWNHYGRIRDTASSWLSRVEIGLDRIDDAPRTYSGGMRQRLQIARNLVTEPRL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHCCCCE
MFMDEPTGGLDVSVQARLLDLLRGLVTDLGLAAIVVTHDLAVARLLSHRVMVMQGGRVIE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEE
TGLTDQVLDDPHEPYTQLLVASILPP
CCCCHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]