| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is phnL [H]
Identifier: 86751202
GI number: 86751202
Start: 4664094
End: 4664804
Strand: Direct
Name: phnL [H]
Synonym: RPB_4094
Alternate gene names: 86751202
Gene position: 4664094-4664804 (Clockwise)
Preceding gene: 86751201
Following gene: 86751203
Centisome position: 87.48
GC content: 67.93
Gene sequence:
>711_bases ATGAGCCCGCCGATGTCCGCGATGATCCAACTCACCAACGCCGAGAAGACCTTCGTCATGCACCTGCAGGGCGGCGTGCG GCTGCCCGTGGTGCGCGGCGTCTCGTTCCACGTCGACGCCGGCGAATGCGTCGTCCTGGCCGGGCCGTCCGGCGCCGGCA AATCGTCGATCCTGAAGATGATCTTCGGCAATTATCGCTGCGACGCCGGTCGCATCGCCATCCTGCATCGCGGCGCGACG ATCGACCTCGCTACCGCCGAGCCGCGGCAGGTGCTGGAGTTGCGCCGCGACACGATCGGCTATGTCAGCCAGTTTTTACG GGCGGTGCCGCGTGTTGCAGCAATCGACGTGGTCGCCGAGCCGCTGGTCGCAGGCAGCGTCGGCAAGGACGAGGCACGCG GGCGCGCCGGCGAATTGTTGAAGCGGCTCAACATCGCCGAGCGGCTGTGGTCGCTGCCGCCGGCGACGTTCTCCGGCGGC GAACAGCAGCGCGTCAACATCGCTCGCGGCTTCATCGCGCATGTGCCGATCCTGCTGCTCGACGAGCCGACCGCGTCGCT CGACGCCGCCAATCGCGAGGTGGTGATGCGCCTGATCGCCGAGAAGAAACGCGACGGCGTCGCCTTGATCGCCATTGTCC ACGACGACGAAGTCCGCGCCCGGATCGCCGATCGGCTGATCGACGTCGCGAGCTTCGCCGCTGCCGCCTGA
Upstream 100 bases:
>100_bases TGCAGGGTGGCCGCGTGATCGAAACCGGCCTCACCGACCAGGTGCTCGACGACCCGCACGAGCCCTACACCCAGCTTCTC GTCGCCTCGATCCTGCCGCC
Downstream 100 bases:
>100_bases AGAGAGACGAAAACCGATGACGACCAACTCCGAATTCGTTCTGCGCAACGCCCGCATCGTGCTCGCCGACCGGGTGATCG AGCACGGCTGGCTGGCGATC
Product: phosphonate C-P lyase system, PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSPPMSAMIQLTNAEKTFVMHLQGGVRLPVVRGVSFHVDAGECVVLAGPSGAGKSSILKMIFGNYRCDAGRIAILHRGAT IDLATAEPRQVLELRRDTIGYVSQFLRAVPRVAAIDVVAEPLVAGSVGKDEARGRAGELLKRLNIAERLWSLPPATFSGG EQQRVNIARGFIAHVPILLLDEPTASLDAANREVVMRLIAEKKRDGVALIAIVHDDEVRARIADRLIDVASFAAAA
Sequences:
>Translated_236_residues MSPPMSAMIQLTNAEKTFVMHLQGGVRLPVVRGVSFHVDAGECVVLAGPSGAGKSSILKMIFGNYRCDAGRIAILHRGAT IDLATAEPRQVLELRRDTIGYVSQFLRAVPRVAAIDVVAEPLVAGSVGKDEARGRAGELLKRLNIAERLWSLPPATFSGG EQQRVNIARGFIAHVPILLLDEPTASLDAANREVVMRLIAEKKRDGVALIAIVHDDEVRARIADRLIDVASFAAAA >Mature_235_residues SPPMSAMIQLTNAEKTFVMHLQGGVRLPVVRGVSFHVDAGECVVLAGPSGAGKSSILKMIFGNYRCDAGRIAILHRGATI DLATAEPRQVLELRRDTIGYVSQFLRAVPRVAAIDVVAEPLVAGSVGKDEARGRAGELLKRLNIAERLWSLPPATFSGGE QQRVNIARGFIAHVPILLLDEPTASLDAANREVVMRLIAEKKRDGVALIAIVHDDEVRARIADRLIDVASFAAAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=215, Percent_Identity=28.3720930232558, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=197, Percent_Identity=29.9492385786802, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI9961252, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505771, Length=198, Percent_Identity=30.8080808080808, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI42741659, Length=197, Percent_Identity=30.4568527918782, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592956, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592915, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592964, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592898, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592978, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592971, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1790534, Length=219, Percent_Identity=55.2511415525114, Blast_Score=251, Evalue=3e-68, Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=33.1818181818182, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=34.5291479820628, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=31.1111111111111, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=31.2217194570136, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=33.9805825242718, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=32.1100917431193, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=30.2222222222222, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=32.7433628318584, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=199, Percent_Identity=32.1608040201005, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787500, Length=204, Percent_Identity=29.9019607843137, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1789962, Length=199, Percent_Identity=29.6482412060301, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI145693107, Length=201, Percent_Identity=33.8308457711443, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=32.0574162679426, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1790544, Length=239, Percent_Identity=28.4518828451883, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788644, Length=194, Percent_Identity=31.9587628865979, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=30.9417040358744, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI48995001, Length=197, Percent_Identity=30.9644670050761, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787370, Length=224, Percent_Identity=29.4642857142857, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789891, Length=201, Percent_Identity=31.3432835820896, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1786698, Length=232, Percent_Identity=28.448275862069, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=28.695652173913, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.0178571428571, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=29.9107142857143, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788450, Length=223, Percent_Identity=30.0448430493274, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789032, Length=197, Percent_Identity=28.9340101522843, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=30.9734513274336, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI48994997, Length=202, Percent_Identity=33.1683168316832, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787759, Length=208, Percent_Identity=30.2884615384615, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789593, Length=195, Percent_Identity=31.7948717948718, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=30.4568527918782, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=24.2424242424242, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=29.3577981651376, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786975, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI87082267, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082268, Length=204, Percent_Identity=28.921568627451, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787112, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788053, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=30.622009569378, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788472, Length=188, Percent_Identity=28.7234042553192, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994883, Length=208, Percent_Identity=27.4038461538462, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=205, Percent_Identity=29.7560975609756, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788210, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787792, Length=198, Percent_Identity=30.8080808080808, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=207, Percent_Identity=27.536231884058, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789751, Length=222, Percent_Identity=28.3783783783784, Blast_Score=60, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71996809, Length=193, Percent_Identity=31.6062176165803, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193211015, Length=193, Percent_Identity=31.6062176165803, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193211017, Length=193, Percent_Identity=31.6062176165803, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17558664, Length=210, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71984940, Length=192, Percent_Identity=31.25, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17565938, Length=209, Percent_Identity=28.2296650717703, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17569145, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=216, Percent_Identity=34.2592592592593, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=27.7533039647577, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI85724864, Length=202, Percent_Identity=24.2574257425743, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580555, Length=202, Percent_Identity=24.2574257425743, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85816269, Length=202, Percent_Identity=24.2574257425743, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24580553, Length=202, Percent_Identity=24.2574257425743, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI85726357, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI161077321, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24653245, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363262, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221500365, Length=202, Percent_Identity=27.7227722772277, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007184, Length=202, Percent_Identity=27.7227722772277, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25315; Mature: 25184
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPMSAMIQLTNAEKTFVMHLQGGVRLPVVRGVSFHVDAGECVVLAGPSGAGKSSILKM CCCCHHHHEEECCCCEEEEEEECCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH IFGNYRCDAGRIAILHRGATIDLATAEPRQVLELRRDTIGYVSQFLRAVPRVAAIDVVAE HHCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH PLVAGSVGKDEARGRAGELLKRLNIAERLWSLPPATFSGGEQQRVNIARGFIAHVPILLL HHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEE DEPTASLDAANREVVMRLIAEKKRDGVALIAIVHDDEVRARIADRLIDVASFAAAA CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SPPMSAMIQLTNAEKTFVMHLQGGVRLPVVRGVSFHVDAGECVVLAGPSGAGKSSILKM CCCHHHHEEECCCCEEEEEEECCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH IFGNYRCDAGRIAILHRGATIDLATAEPRQVLELRRDTIGYVSQFLRAVPRVAAIDVVAE HHCCCCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH PLVAGSVGKDEARGRAGELLKRLNIAERLWSLPPATFSGGEQQRVNIARGFIAHVPILLL HHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEE DEPTASLDAANREVVMRLIAEKKRDGVALIAIVHDDEVRARIADRLIDVASFAAAA CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]