| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is nosZ [H]
Identifier: 86750253
GI number: 86750253
Start: 3594318
End: 3596264
Strand: Direct
Name: nosZ [H]
Synonym: RPB_3142
Alternate gene names: 86750253
Gene position: 3594318-3596264 (Clockwise)
Preceding gene: 86750252
Following gene: 86750254
Centisome position: 67.41
GC content: 62.81
Gene sequence:
>1947_bases ATGACCGACAACACCAAGGATCACGGCGTCAGCCGACGCACCTTGCTCGGAACCACTGCCGCGGCGGCCGGCGTCGGCCT CGCCGGTGGCATCGCATTCACCACCGACGGCAATCAGCTGATCGGGACCGCCGATGCCCAGACCAAGGCCGCGCCGACGC TTCCCGCGCGCCCGGCGATCCACAAGGCCGAGGTCGCCCCCGGCGAGCTCGACGAATACTACGTGTTCTTCTCGAGCGGC CAGACCGGCGAATTGCGGATCGTCGGGCTGCCCTCGATGCGCGAACTGATGCGCGTGCCGGTGTTCAACCGCTGCAGCGC CACCGGCTGGGGCCAGACCAACGAAAGCCTCAAAGTTTTGACCGAGGGCCTGCTGCCGGAGACCCGCGAATTCCTCAAGA CTCGCGGCGGCACTTATGTGAACGGCGATCTGCACCACCCGCATCTGTCGTTCACCGACGGCACCTATGACGGCCGCTAC GCCTTCATGAACGACAAGGCCAACACCCGCGTCGCCCGCGTCCGGCTCGACGTGATGAAATGCGACAAGATCATCCAGTT GCCGAACCAGCACACCGTGCACGGCCTGCGCGTGCAGAAATATCCGCGCACCGGCTACGTGTTCTGCAACGGCGAGGACC GCGTGCCGCTGGTCAACGACGGCAAGATCCTCGACAAGCCGAAGGAATACCACGCGATCTTCACCGCGGTCGACGGCGAC ACCATGAAGGTGGCCTGGCAGGTGATGGTCGACGGCAATCTCGACAACGTCGATGCCGACTATCAGGGCAAATACGCATT CGCGACCTGCTACAATTCTGAGGAAGGCGTCAACGCCGCGGAAATGACCGCGAGCGAGCAGGACTGGGTCGTCATCTTCA ATCTCAAGCGGATCGAAGAGGGCGTGAAGAAGGGCGACTTCAAGGAGATGGGCGGCGTTCCGGTGCTCGACGGCCGCAAG GGATCGCCCTACACCCGCTACGTCCCGATCTCCAACAGCCCGCACGGCATGAACACCGCACCCGACGGCATCCACATCGT CGCCAACGGCAAGCTGTCGCCGACCGCGACGGTGATGGACGTGCGGCTGTTCGATCAGTTGTTCGACGACAAGATCAAGC CGCGCGACGTCGTGGTGGCGGAGCCGGAGCTCGGCCTCGGCCCGTTGCACACCGCCTATGACGGCAAGGGCAACGCCTAC ACCACGCTGTTCATCGACAGCCAGATCTGCAAGTGGAACATCGATCTGGCGAAGCGCGCCTTCAAGGGCGAGAAGGTCAG TCCGATCCTGCAGAAGCTCGACGTCCACTATCAGCCCGGCCACAACCACACCTCGATGGGCCAGACCAAGGAAGCCGACG GGAAATGGCTGATCTCGCTGAACAAGTTCTCGAAGGATCGGTTCCTCAATGTCGGGCCGCTGAAGCCGGAGAACGACCAG CTCATCGACATCTCCGGCGACAAGATGAAGCTGGTGCACGACGGCCCGAGCTTCGCCGAGCCGCATGACGCCACCATCGT GCATCGTTCCAAGATCAACCCGATCTCGATCTGGGACCGCGCCGATCCGATGTTCTCCGACGCGATCAAGCAGGCCAAGG CCGACGGCATCAAGCTGGAAGAGGAGTCCAAGGTGATCCGCGACGGCAACATCGTGCGGGTCTACATGACCTCGCAAGCG CCGTCGTTCGGGCTCGAGCACTTCCAGGTCAAGCAAGGCGATCAGGTCACCGTCTACGTCACCAACATCGACTCCGTCGA GGATCTCACCCACGGCTTCTCGATCATCAACTACGGCATCAACATGGAGGTGGCGCCGCAAGCCACGGCCTCGGTGTCGT TCTCGGCCGACAAGGCCGGGGTGTATTGGTACTACTGCTCCTGGTTCTGCCACGCCATGCACATGGAGATGAAGGGCCGG ATGTTCGTCGAGCCGAAGACGGCCTGA
Upstream 100 bases:
>100_bases GCAGCGGCAAAGGCCCGGACACGCTCATCACCGCCGGCGGCCGACCGATCGCCGGCCTGACGACATCCCCACCCGCACCC TGAAAGCCTAGGAGCAAACG
Downstream 100 bases:
>100_bases GGAGCATCGAGGTGTCTTTCCTGCTGCGTCTGTTTCCGGCGGCAATGTTCGCCGCCGGAGCCTGCGGCCCCGTTCTGGCG GAGACGATCGGCATCGCGCC
Product: nitrous-oxide reductase
Products: NA
Alternate protein names: N(2)OR; N2O reductase [H]
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MTDNTKDHGVSRRTLLGTTAAAAGVGLAGGIAFTTDGNQLIGTADAQTKAAPTLPARPAIHKAEVAPGELDEYYVFFSSG QTGELRIVGLPSMRELMRVPVFNRCSATGWGQTNESLKVLTEGLLPETREFLKTRGGTYVNGDLHHPHLSFTDGTYDGRY AFMNDKANTRVARVRLDVMKCDKIIQLPNQHTVHGLRVQKYPRTGYVFCNGEDRVPLVNDGKILDKPKEYHAIFTAVDGD TMKVAWQVMVDGNLDNVDADYQGKYAFATCYNSEEGVNAAEMTASEQDWVVIFNLKRIEEGVKKGDFKEMGGVPVLDGRK GSPYTRYVPISNSPHGMNTAPDGIHIVANGKLSPTATVMDVRLFDQLFDDKIKPRDVVVAEPELGLGPLHTAYDGKGNAY TTLFIDSQICKWNIDLAKRAFKGEKVSPILQKLDVHYQPGHNHTSMGQTKEADGKWLISLNKFSKDRFLNVGPLKPENDQ LIDISGDKMKLVHDGPSFAEPHDATIVHRSKINPISIWDRADPMFSDAIKQAKADGIKLEEESKVIRDGNIVRVYMTSQA PSFGLEHFQVKQGDQVTVYVTNIDSVEDLTHGFSIINYGINMEVAPQATASVSFSADKAGVYWYYCSWFCHAMHMEMKGR MFVEPKTA
Sequences:
>Translated_648_residues MTDNTKDHGVSRRTLLGTTAAAAGVGLAGGIAFTTDGNQLIGTADAQTKAAPTLPARPAIHKAEVAPGELDEYYVFFSSG QTGELRIVGLPSMRELMRVPVFNRCSATGWGQTNESLKVLTEGLLPETREFLKTRGGTYVNGDLHHPHLSFTDGTYDGRY AFMNDKANTRVARVRLDVMKCDKIIQLPNQHTVHGLRVQKYPRTGYVFCNGEDRVPLVNDGKILDKPKEYHAIFTAVDGD TMKVAWQVMVDGNLDNVDADYQGKYAFATCYNSEEGVNAAEMTASEQDWVVIFNLKRIEEGVKKGDFKEMGGVPVLDGRK GSPYTRYVPISNSPHGMNTAPDGIHIVANGKLSPTATVMDVRLFDQLFDDKIKPRDVVVAEPELGLGPLHTAYDGKGNAY TTLFIDSQICKWNIDLAKRAFKGEKVSPILQKLDVHYQPGHNHTSMGQTKEADGKWLISLNKFSKDRFLNVGPLKPENDQ LIDISGDKMKLVHDGPSFAEPHDATIVHRSKINPISIWDRADPMFSDAIKQAKADGIKLEEESKVIRDGNIVRVYMTSQA PSFGLEHFQVKQGDQVTVYVTNIDSVEDLTHGFSIINYGINMEVAPQATASVSFSADKAGVYWYYCSWFCHAMHMEMKGR MFVEPKTA >Mature_647_residues TDNTKDHGVSRRTLLGTTAAAAGVGLAGGIAFTTDGNQLIGTADAQTKAAPTLPARPAIHKAEVAPGELDEYYVFFSSGQ TGELRIVGLPSMRELMRVPVFNRCSATGWGQTNESLKVLTEGLLPETREFLKTRGGTYVNGDLHHPHLSFTDGTYDGRYA FMNDKANTRVARVRLDVMKCDKIIQLPNQHTVHGLRVQKYPRTGYVFCNGEDRVPLVNDGKILDKPKEYHAIFTAVDGDT MKVAWQVMVDGNLDNVDADYQGKYAFATCYNSEEGVNAAEMTASEQDWVVIFNLKRIEEGVKKGDFKEMGGVPVLDGRKG SPYTRYVPISNSPHGMNTAPDGIHIVANGKLSPTATVMDVRLFDQLFDDKIKPRDVVVAEPELGLGPLHTAYDGKGNAYT TLFIDSQICKWNIDLAKRAFKGEKVSPILQKLDVHYQPGHNHTSMGQTKEADGKWLISLNKFSKDRFLNVGPLKPENDQL IDISGDKMKLVHDGPSFAEPHDATIVHRSKINPISIWDRADPMFSDAIKQAKADGIKLEEESKVIRDGNIVRVYMTSQAP SFGLEHFQVKQGDQVTVYVTNIDSVEDLTHGFSIINYGINMEVAPQATASVSFSADKAGVYWYYCSWFCHAMHMEMKGRM FVEPKTA
Specific function: Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide [H]
COG id: COG4263
COG function: function code C; Nitrous oxide reductase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008972 - InterPro: IPR002429 - InterPro: IPR011045 - InterPro: IPR006311 - InterPro: IPR015943 [H]
Pfam domain/function: PF00116 COX2 [H]
EC number: =1.7.99.6 [H]
Molecular weight: Translated: 71707; Mature: 71576
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS50857 COX2_CUA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDNTKDHGVSRRTLLGTTAAAAGVGLAGGIAFTTDGNQLIGTADAQTKAAPTLPARPAI CCCCCCCCCCCCEEEEECHHHHHCCCEECCEEEEECCCEEEEECCCCCCCCCCCCCCCCC HKAEVAPGELDEYYVFFSSGQTGELRIVGLPSMRELMRVPVFNRCSATGWGQTNESLKVL CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH TEGLLPETREFLKTRGGTYVNGDLHHPHLSFTDGTYDGRYAFMNDKANTRVARVRLDVMK HHCCCHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEEEEHHH CDKIIQLPNQHTVHGLRVQKYPRTGYVFCNGEDRVPLVNDGKILDKPKEYHAIFTAVDGD HHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCC TMKVAWQVMVDGNLDNVDADYQGKYAFATCYNSEEGVNAAEMTASEQDWVVIFNLKRIEE EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEHHHHHH GVKKGDFKEMGGVPVLDGRKGSPYTRYVPISNSPHGMNTAPDGIHIVANGKLSPTATVMD HHHCCCHHHHCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEH VRLFDQLFDDKIKPRDVVVAEPELGLGPLHTAYDGKGNAYTTLFIDSQICKWNIDLAKRA HHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEEECCEEEEEHHHHHHH FKGEKVSPILQKLDVHYQPGHNHTSMGQTKEADGKWLISLNKFSKDRFLNVGPLKPENDQ HCCCCCCHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCC LIDISGDKMKLVHDGPSFAEPHDATIVHRSKINPISIWDRADPMFSDAIKQAKADGIKLE EEEECCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEC EESKVIRDGNIVRVYMTSQAPSFGLEHFQVKQGDQVTVYVTNIDSVEDLTHGFSIINYGI CCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHCCEEEEEECC NMEVAPQATASVSFSADKAGVYWYYCSWFCHAMHMEMKGRMFVEPKTA CEEECCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEECCCCC >Mature Secondary Structure TDNTKDHGVSRRTLLGTTAAAAGVGLAGGIAFTTDGNQLIGTADAQTKAAPTLPARPAI CCCCCCCCCCCEEEEECHHHHHCCCEECCEEEEECCCEEEEECCCCCCCCCCCCCCCCC HKAEVAPGELDEYYVFFSSGQTGELRIVGLPSMRELMRVPVFNRCSATGWGQTNESLKVL CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH TEGLLPETREFLKTRGGTYVNGDLHHPHLSFTDGTYDGRYAFMNDKANTRVARVRLDVMK HHCCCHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEEEEHHH CDKIIQLPNQHTVHGLRVQKYPRTGYVFCNGEDRVPLVNDGKILDKPKEYHAIFTAVDGD HHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEEEEECCC TMKVAWQVMVDGNLDNVDADYQGKYAFATCYNSEEGVNAAEMTASEQDWVVIFNLKRIEE EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEHHHHHH GVKKGDFKEMGGVPVLDGRKGSPYTRYVPISNSPHGMNTAPDGIHIVANGKLSPTATVMD HHHCCCHHHHCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEH VRLFDQLFDDKIKPRDVVVAEPELGLGPLHTAYDGKGNAYTTLFIDSQICKWNIDLAKRA HHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEEECCEEEEEHHHHHHH FKGEKVSPILQKLDVHYQPGHNHTSMGQTKEADGKWLISLNKFSKDRFLNVGPLKPENDQ HCCCCCCHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCC LIDISGDKMKLVHDGPSFAEPHDATIVHRSKINPISIWDRADPMFSDAIKQAKADGIKLE EEEECCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEC EESKVIRDGNIVRVYMTSQAPSFGLEHFQVKQGDQVTVYVTNIDSVEDLTHGFSIINYGI CCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHCCEEEEEECC NMEVAPQATASVSFSADKAGVYWYYCSWFCHAMHMEMKGRMFVEPKTA CEEECCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]