Click here to switch to the map view.

The map label for this gene is nosD [H]

Identifier: 86750254

GI number: 86750254

Start: 3596276

End: 3597634

Strand: Direct

Name: nosD [H]

Synonym: RPB_3143

Alternate gene names: 86750254

Gene position: 3596276-3597634 (Clockwise)

Preceding gene: 86750253

Following gene: 86750255

Centisome position: 67.45

GC content: 65.64

Gene sequence:

>1359_bases
GTGTCTTTCCTGCTGCGTCTGTTTCCGGCGGCAATGTTCGCCGCCGGAGCCTGCGGCCCCGTTCTGGCGGAGACGATCGG
CATCGCGCCGACGCAGTCGCTGCAGGCGGCGCTGGAGCGTGCGCAGCAGGGCGACGTCCTCGAACTCGCACCGGGCGATC
ATCACGGCCCGATCCGGATCGATCGACGCGTCGTGATCGGCGGCAGGCCCGGGGCGAACCTCGTCGGCAACGGCAGCGGC
AGCGTCGTCACGGTCACGGTTCCGGACGTCACCATCCGCGGCCTCACCATCAAGGGCTCAGGCCGCGACCTGCAGACCAT
GGACTCGGGCATTTTCCTCACCAAGGACGCGGCCCGCGCGCTGGTCGAAAACAACCGACTCGAAGGCAACCTGTTCGGAG
TTTACGTTCATGGCGCGACCGGATCGCGGGTGCAGCGCAACGTCATCGAGGGCCTGCGCAATGTCCGGCTCAACGAGGCC
GGCAACGGCGTCTCGGTGTGGAATGCACCGGACGTCGTCATCGCCGGGAACATCTTCCGCTACGGCCGCGATGGCATCTT
CAGCATCACCAGCCGCAAGGACCGCTTCATCGACAATCGTTTCGAAGGTGTCCGCTTCGCCGTCCACTACATGTACACCA
ACGACAGCGAGATCTCCGGCAACGTCTCGATCGGCAACCACGTCGGCTACGCCATCATGTTCTCCAATCGGCTGATCATC
CGCGGCAACGTCTCGGAGCGCGACCGCGATCACGGATTCCTGTTCAACTACGCCAATTATGCCGCGATCGAGGGCAACCG
CGTCACCGGCGGTCCACGCCGCGGCCTGATCGATCGCGAGGATGCCGCCGACGACGAGAAGGGCATGCTGCCGGAGCCGC
GCGGAGCGCAGCCGAGCGACGAAGGCCCCGGCAAATGCGTGTTCATCTACAACGCCAACCACAACAAATTCCGCGACAAC
TGGTTCGAGCGCTGCGGCATCGGCGTGCACTTCACCGCAGGCTCGGAGGGTAACGAGATCACCGGCAATGCCTTCGTCGG
CAACCGCACCCAGGTGAAATATGTCGGCACCCAAGACCTCGACTGGTCGAAGGGCGGCCGCGGCAATTACTGGAGCGATA
ACCCCGCATTCGATCTCGACGGCGACGGCATCGCCGACACCGCCTATCGGCCCAACGATCTGGTCGACCGGGTGCTGTGG
ACCGCGCCATCGGCCAAGGTGCTGATCAACAGCCCCGCGGTCCAGGTGCTGCGCTGGGCGCAGAGCCAGTTTCCGGCGCT
GTATCCCGGCGGCGTGGTCGACAGTCGCCCGCTGATCGCGCCGCCGCCGAAACCCTCGGCGTCGCGGAGCCAACCATGA

Upstream 100 bases:

>100_bases
GGGTGTATTGGTACTACTGCTCCTGGTTCTGCCACGCCATGCACATGGAGATGAAGGGCCGGATGTTCGTCGAGCCGAAG
ACGGCCTGAGGAGCATCGAG

Downstream 100 bases:

>100_bases
GCGCGACCGTCTGCATCAGCGACGTCGAGAAGAGCTATCGCGCGGTGCGCGCGCTGCGCGACGTCTCGTTCGAGTTGGCG
CCGGGCCGGCTCAGCGCATT

Product: periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MSFLLRLFPAAMFAAGACGPVLAETIGIAPTQSLQAALERAQQGDVLELAPGDHHGPIRIDRRVVIGGRPGANLVGNGSG
SVVTVTVPDVTIRGLTIKGSGRDLQTMDSGIFLTKDAARALVENNRLEGNLFGVYVHGATGSRVQRNVIEGLRNVRLNEA
GNGVSVWNAPDVVIAGNIFRYGRDGIFSITSRKDRFIDNRFEGVRFAVHYMYTNDSEISGNVSIGNHVGYAIMFSNRLII
RGNVSERDRDHGFLFNYANYAAIEGNRVTGGPRRGLIDREDAADDEKGMLPEPRGAQPSDEGPGKCVFIYNANHNKFRDN
WFERCGIGVHFTAGSEGNEITGNAFVGNRTQVKYVGTQDLDWSKGGRGNYWSDNPAFDLDGDGIADTAYRPNDLVDRVLW
TAPSAKVLINSPAVQVLRWAQSQFPALYPGGVVDSRPLIAPPPKPSASRSQP

Sequences:

>Translated_452_residues
MSFLLRLFPAAMFAAGACGPVLAETIGIAPTQSLQAALERAQQGDVLELAPGDHHGPIRIDRRVVIGGRPGANLVGNGSG
SVVTVTVPDVTIRGLTIKGSGRDLQTMDSGIFLTKDAARALVENNRLEGNLFGVYVHGATGSRVQRNVIEGLRNVRLNEA
GNGVSVWNAPDVVIAGNIFRYGRDGIFSITSRKDRFIDNRFEGVRFAVHYMYTNDSEISGNVSIGNHVGYAIMFSNRLII
RGNVSERDRDHGFLFNYANYAAIEGNRVTGGPRRGLIDREDAADDEKGMLPEPRGAQPSDEGPGKCVFIYNANHNKFRDN
WFERCGIGVHFTAGSEGNEITGNAFVGNRTQVKYVGTQDLDWSKGGRGNYWSDNPAFDLDGDGIADTAYRPNDLVDRVLW
TAPSAKVLINSPAVQVLRWAQSQFPALYPGGVVDSRPLIAPPPKPSASRSQP
>Mature_451_residues
SFLLRLFPAAMFAAGACGPVLAETIGIAPTQSLQAALERAQQGDVLELAPGDHHGPIRIDRRVVIGGRPGANLVGNGSGS
VVTVTVPDVTIRGLTIKGSGRDLQTMDSGIFLTKDAARALVENNRLEGNLFGVYVHGATGSRVQRNVIEGLRNVRLNEAG
NGVSVWNAPDVVIAGNIFRYGRDGIFSITSRKDRFIDNRFEGVRFAVHYMYTNDSEISGNVSIGNHVGYAIMFSNRLIIR
GNVSERDRDHGFLFNYANYAAIEGNRVTGGPRRGLIDREDAADDEKGMLPEPRGAQPSDEGPGKCVFIYNANHNKFRDNW
FERCGIGVHFTAGSEGNEITGNAFVGNRTQVKYVGTQDLDWSKGGRGNYWSDNPAFDLDGDGIADTAYRPNDLVDRVLWT
APSAKVLINSPAVQVLRWAQSQFPALYPGGVVDSRPLIAPPPKPSASRSQP

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 48967; Mature: 48836

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLLRLFPAAMFAAGACGPVLAETIGIAPTQSLQAALERAQQGDVLELAPGDHHGPIRI
CHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEE
DRRVVIGGRPGANLVGNGSGSVVTVTVPDVTIRGLTIKGSGRDLQTMDSGIFLTKDAARA
EEEEEECCCCCCCEEECCCCCEEEEEECCEEEEEEEEECCCCCHHCCCCCEEEEHHHHHH
LVENNRLEGNLFGVYVHGATGSRVQRNVIEGLRNVRLNEAGNGVSVWNAPDVVIAGNIFR
HHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCEEECCCCCEEEECCCCEEEECCEEE
YGRDGIFSITSRKDRFIDNRFEGVRFAVHYMYTNDSEISGNVSIGNHVGYAIMFSNRLII
ECCCCEEEECCCCHHHHHCCCCCEEEEEEEEEECCCCCCCEEEECCCCEEEEEEECEEEE
RGNVSERDRDHGFLFNYANYAAIEGNRVTGGPRRGLIDREDAADDEKGMLPEPRGAQPSD
ECCCCCCCCCCCEEEECCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGPGKCVFIYNANHNKFRDNWFERCGIGVHFTAGSEGNEITGNAFVGNRTQVKYVGTQDL
CCCCCEEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCEEECCEEECCCEEEEEECCCCC
DWSKGGRGNYWSDNPAFDLDGDGIADTAYRPNDLVDRVLWTAPSAKVLINSPAVQVLRWA
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHH
QSQFPALYPGGVVDSRPLIAPPPKPSASRSQP
HHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SFLLRLFPAAMFAAGACGPVLAETIGIAPTQSLQAALERAQQGDVLELAPGDHHGPIRI
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCEEE
DRRVVIGGRPGANLVGNGSGSVVTVTVPDVTIRGLTIKGSGRDLQTMDSGIFLTKDAARA
EEEEEECCCCCCCEEECCCCCEEEEEECCEEEEEEEEECCCCCHHCCCCCEEEEHHHHHH
LVENNRLEGNLFGVYVHGATGSRVQRNVIEGLRNVRLNEAGNGVSVWNAPDVVIAGNIFR
HHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCEEECCCCCEEEECCCCEEEECCEEE
YGRDGIFSITSRKDRFIDNRFEGVRFAVHYMYTNDSEISGNVSIGNHVGYAIMFSNRLII
ECCCCEEEECCCCHHHHHCCCCCEEEEEEEEEECCCCCCCEEEECCCCEEEEEEECEEEE
RGNVSERDRDHGFLFNYANYAAIEGNRVTGGPRRGLIDREDAADDEKGMLPEPRGAQPSD
ECCCCCCCCCCCEEEECCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGPGKCVFIYNANHNKFRDNWFERCGIGVHFTAGSEGNEITGNAFVGNRTQVKYVGTQDL
CCCCCEEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCEEECCEEECCCEEEEEECCCCC
DWSKGGRGNYWSDNPAFDLDGDGIADTAYRPNDLVDRVLWTAPSAKVLINSPAVQVLRWA
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHH
QSQFPALYPGGVVDSRPLIAPPPKPSASRSQP
HHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]