Click here to switch to the map view.

The map label for this gene is 86750178

Identifier: 86750178

GI number: 86750178

Start: 3493742

End: 3494149

Strand: Direct

Name: 86750178

Synonym: RPB_3062

Alternate gene names: NA

Gene position: 3493742-3494149 (Clockwise)

Preceding gene: 86750177

Following gene: 86750179

Centisome position: 65.53

GC content: 60.54

Gene sequence:

>408_bases
ATGCTGACTCGCGTCTTCCCTTTTCTCGACCCAGGCATGATCACCCACGAGTTCTCCGAGCGGCTGAATTCATTGGCTAG
GGATTGCGCCCTTCTCGAACACGACCTTTCCTTCGTCGAATCCAGATTGTGGACGGCGCCAACTCTGGATCTCTATGTCC
CTCTGCTGACGCCCCTCGGCCTGCATCTGGTCGGCCAGGTCACGCACCATCCGCTTCTGGGATCGCGCAAGATCGTCACC
TCGCAGCTATGGTGGGCCGATCCCGAGGGCCGCTGGGCTCGCACGTTGTCGCGCTTCTACCTCCTCGGCCGCCCCGCCGA
TCCCGATGGTCGGGAGCACATCACAAGCACGTCTTTGTTTACTTACGATGACCGAGACCTGGACGGCTGGCCCGGAGATT
ACGATTGA

Upstream 100 bases:

>100_bases
ACCGGCGGCACGTTGGCCGTCTTGAGGCGGGCCGTCTGCCTTCGTCGCCTCCTACCAGCGCCGATCCCCCAATCTTCCAC
CACAAACCCACGAGCACGCA

Downstream 100 bases:

>100_bases
TCGGAAACGATGATGACGGTGACGTTCCGCCGTCTCCCGATGCCGTCGATCTGGACGCTACCGTCGACGGTGCCGCAGCA
GACTCGGCCGATAGCGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MLTRVFPFLDPGMITHEFSERLNSLARDCALLEHDLSFVESRLWTAPTLDLYVPLLTPLGLHLVGQVTHHPLLGSRKIVT
SQLWWADPEGRWARTLSRFYLLGRPADPDGREHITSTSLFTYDDRDLDGWPGDYD

Sequences:

>Translated_135_residues
MLTRVFPFLDPGMITHEFSERLNSLARDCALLEHDLSFVESRLWTAPTLDLYVPLLTPLGLHLVGQVTHHPLLGSRKIVT
SQLWWADPEGRWARTLSRFYLLGRPADPDGREHITSTSLFTYDDRDLDGWPGDYD
>Mature_135_residues
MLTRVFPFLDPGMITHEFSERLNSLARDCALLEHDLSFVESRLWTAPTLDLYVPLLTPLGLHLVGQVTHHPLLGSRKIVT
SQLWWADPEGRWARTLSRFYLLGRPADPDGREHITSTSLFTYDDRDLDGWPGDYD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15505; Mature: 15505

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRVFPFLDPGMITHEFSERLNSLARDCALLEHDLSFVESRLWTAPTLDLYVPLLTPLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LHLVGQVTHHPLLGSRKIVTSQLWWADPEGRWARTLSRFYLLGRPADPDGREHITSTSLF
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEE
TYDDRDLDGWPGDYD
EECCCCCCCCCCCCC
>Mature Secondary Structure
MLTRVFPFLDPGMITHEFSERLNSLARDCALLEHDLSFVESRLWTAPTLDLYVPLLTPLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LHLVGQVTHHPLLGSRKIVTSQLWWADPEGRWARTLSRFYLLGRPADPDGREHITSTSLF
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEE
TYDDRDLDGWPGDYD
EECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA