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The map label for this gene is rpoZ [H]

Identifier: 86749725

GI number: 86749725

Start: 2990694

End: 2991086

Strand: Direct

Name: rpoZ [H]

Synonym: RPB_2607

Alternate gene names: 86749725

Gene position: 2990694-2991086 (Clockwise)

Preceding gene: 86749722

Following gene: 86749726

Centisome position: 56.09

GC content: 60.56

Gene sequence:

>393_bases
ATGGCGCGCGTCACCGTGGAAGATTGTATTGATAAGGTCGACAACCGTTTCGACCTGGTCCTGCTGGCGGCGCATCGTGC
GCGCATGATTTCGTCCGGCTCGCAGCTCACAATCGACCGTGACAACGACAAGAATCCCGTTGTTTCGCTTCGAGAAATTG
CCGAGCAGACGGTCTCGCCGGAAGACCTCAAAGAGGAACTCGTGCACTCGCTGCAGAAGTTCGTCGAGGTCGATGAGCCG
GAACAGGATACCGTTCCGCTGATCGGATCGGCCGGCGCCAGCGTCGATGCCGACGACACCGAGGTGGCGCTGGAGCGCAT
GACCGAGGAAGAGCTTCTCAAGGGTCTGGAAGGCCTGGCGCCCCCGGAAGAGCAGCCCGAGGAAGACGAATAG

Upstream 100 bases:

>100_bases
GTTCACGGCCAAATGACAAAATGGTTCTTGCGCATCACGTCAACCCCCTATACCTAAGCCAGATACCCGCATTTTGGTCC
TTTGAACGGAGCGACTGGCG

Downstream 100 bases:

>100_bases
GCGCAGAGCGCCGTCGCTCTCCTGTCCCGAATTCGAACAAACGGCCCGGATCACTCCGGGCCGTTTGTTCTGTGGTCGGG
CAAAATGCCTTGCGGTCGAT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSPEDLKEELVHSLQKFVEVDEP
EQDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGLAPPEEQPEEDE

Sequences:

>Translated_130_residues
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSPEDLKEELVHSLQKFVEVDEP
EQDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGLAPPEEQPEEDE
>Mature_129_residues
ARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSPEDLKEELVHSLQKFVEVDEPE
QDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGLAPPEEQPEEDE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=48.4375, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 14412; Mature: 14281

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSP
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
EDLKEELVHSLQKFVEVDEPEQDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGLA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHCCC
PPEEQPEEDE
CCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSP
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCH
EDLKEELVHSLQKFVEVDEPEQDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGLA
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHCCC
PPEEQPEEDE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]