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The map label for this gene is smpB

Identifier: 86749722

GI number: 86749722

Start: 2988529

End: 2989002

Strand: Direct

Name: smpB

Synonym: RPB_2604

Alternate gene names: 86749722

Gene position: 2988529-2989002 (Clockwise)

Preceding gene: 86749721

Following gene: 86749725

Centisome position: 56.05

GC content: 63.29

Gene sequence:

>474_bases
ATGGCCGAGAAGAACGAACGCGCGATCAAGGTGGTCGCGGAGAACCGCAAGGCGCGGTTCAACTACGCGATCGAGGACAC
CGTCGAGGCCGGCATTTCGCTGACCGGCACCGAGGTGAAATCGGTCCGCGGCGGCAAGGCGACGATTGCCGAATCCTACG
CGGATTCCCGCGGCGGCGAGATCTGGCTGATCAACGCCACCATCCCGGAATATCTGCAGGCCAACCGCTTCAATCACGAG
CCGAAGCGGCCGCGCAAATTGCTGCTGCACAGGAAGCAGATCAACAAGCTGATGGGCGCGATCGAGCGCCAGGGCATGAC
GTTGGTGCCGCTGAAACTGTATTTCAACGAGAAGGGGCGCGCCAAGCTGCTGCTGGCGCTCGCCAAGGGCAAGCAGCTGC
ACGACAAGCGCGAGACCGAGAAGAAGCGCGACTGGAGTCGCGAGAAGGGACGATTGCTGCGGGCGCGGGGCTGA

Upstream 100 bases:

>100_bases
GAGCAGGAACTGCTCGCCGAGATACGCGATATCCTGAAGAGCGGCAGCCGCCCGCAGGCTTGAGCCTGCAGCGGAGCGGC
GACAACGAGGTTCAGCCGCA

Downstream 100 bases:

>100_bases
GGCGCTGCGCAGGACAGCCGCTCGGCGCGACTACGCGTCCAGATCGGCGCGCACCCGCGCGAACACGTCTTGAAACATCT
TCGGCGTCAACACGCGGGTG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MAEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGEIWLINATIPEYLQANRFNHE
PKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGRAKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG

Sequences:

>Translated_157_residues
MAEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGEIWLINATIPEYLQANRFNHE
PKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGRAKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG
>Mature_156_residues
AEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGEIWLINATIPEYLQANRFNHEP
KRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGRAKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=145, Percent_Identity=41.3793103448276, Blast_Score=114, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_RHOP2 (Q2IWV3)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_486218.1
- ProteinModelPortal:   Q2IWV3
- SMR:   Q2IWV3
- STRING:   Q2IWV3
- GeneID:   3910396
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_2604
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   RPAL316058:RPB_2604-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17965; Mature: 17834

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGE
CCCCCCCEEEEEECCCCCEEEEEHHHHHHCCCEECCCHHHHCCCCCHHHHHHHHCCCCCE
IWLINATIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGR
EEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG
EEEEEEECCCCHHHHHHHHHHHHHCCHHHCCEEECCC
>Mature Secondary Structure 
AEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGE
CCCCCCEEEEEECCCCCEEEEEHHHHHHCCCEECCCHHHHCCCCCHHHHHHHHCCCCCE
IWLINATIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGR
EEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG
EEEEEEECCCCHHHHHHHHHHHHHCCHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA