Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is ompR [H]
Identifier: 86749494
GI number: 86749494
Start: 2728420
End: 2729157
Strand: Reverse
Name: ompR [H]
Synonym: RPB_2374
Alternate gene names: 86749494
Gene position: 2729157-2728420 (Counterclockwise)
Preceding gene: 86749497
Following gene: 86749493
Centisome position: 51.19
GC content: 68.16
Gene sequence:
>738_bases ATGGCCGATCAACCACAGTTGCCGCACATCCTGGTCGTCGACGATCACCGCGAGATCCGCGAGGCGGTGACAAAATACCT CGAGCGCAACGGCATGCGCGCCAGCGCCGCCAGCAACACGGTCGAGATGGACGCTCAGCTCAAGGCCGGACGGTTCGACC TGATCATCCTCGACGTGATGATGCCCGGCGAGGATGGGCTGTCGGCAGCGCGGCGGCTGAGCACAGGCGGCGGCCCGCCG GTGCTGATGCTGAGCGCGCTGTCGGACGAGACCGACCGCGTGGTCGGGCTGGAGATCGGCGCCGACGATTATCTCGCCAA GCCGTTCAGCCCGCGCGAATTGCTGGCGCGGATCAAGGCGATCCTGCGCCGGAGCGAACGGCGCGAGCCGCTCGCCGGGA CGCTGGGCGGCCGCAAGCTCGGCTTCGCCGGCTGGTTGCTCGACACCGATACCCGCGACCTCGTCCGCGACGCCGACCGC GCGGAGAAAATCGCCCTGACGACGGCGGAGTTCAAGCTGCTGGTGGCGTTTCTGGAACGGCCGCGGTTCGTGTTGACGCG CGAGCAGTTGCTCGACATCACCAGCGGCCGCAGCGCCGACGTGTTCGACCGCACCATCGACAACCAGGTGAGCCGGCTGC GTCGCAAGATCGAGGACGATCCGGCGCATCCGAAGATCATCACCACGGTTCGCTCCGGCGGCTACAGCCTCGCCGCCGAC GTCCGGGAGCTGCCATGA
Upstream 100 bases:
>100_bases CCGCTTGGAGATTTGTATCGGTCTGTCGCAAGACGCCGGCCTGCGATGATTTGCGACAGAAGTCTTTTCCGGCGCGGGGC AAGTCGGGCTAGATCAAGAC
Downstream 100 bases:
>100_bases GCCGCCGCAGGCCGCGCAGCCTTCTCACCCAGGTGGCGCTGCTCAGCTTCGCAGCGCTCCTCGTCGCCCAGTTCGTCAGT TTCTGGCTGTTCACAGCCGA
Product: two component transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLSAARRLSTGGGPP VLMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERREPLAGTLGGRKLGFAGWLLDTDTRDLVRDADR AEKIALTTAEFKLLVAFLERPRFVLTREQLLDITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD VRELP
Sequences:
>Translated_245_residues MADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLSAARRLSTGGGPP VLMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERREPLAGTLGGRKLGFAGWLLDTDTRDLVRDADR AEKIALTTAEFKLLVAFLERPRFVLTREQLLDITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD VRELP >Mature_244_residues ADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLSAARRLSTGGGPPV LMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERREPLAGTLGGRKLGFAGWLLDTDTRDLVRDADRA EKIALTTAEFKLLVAFLERPRFVLTREQLLDITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADV RELP
Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=44.3965517241379, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1790863, Length=243, Percent_Identity=33.7448559670782, Blast_Score=149, Evalue=1e-37, Organism=Escherichia coli, GI1786599, Length=233, Percent_Identity=40.343347639485, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1788394, Length=242, Percent_Identity=36.3636363636364, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI1787229, Length=234, Percent_Identity=35.042735042735, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1786784, Length=229, Percent_Identity=38.4279475982533, Blast_Score=124, Evalue=5e-30, Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=38.3620689655172, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1786911, Length=229, Percent_Identity=34.9344978165939, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1790860, Length=232, Percent_Identity=34.051724137931, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87082012, Length=230, Percent_Identity=36.0869565217391, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI145693140, Length=239, Percent_Identity=32.2175732217573, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787375, Length=228, Percent_Identity=30.7017543859649, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1790552, Length=239, Percent_Identity=29.7071129707113, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789402, Length=230, Percent_Identity=29.1304347826087, Blast_Score=80, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 27185; Mature: 27053
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVM CCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEEEEEEEEE MPGEDGLSAARRLSTGGGPPVLMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKA ECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHH ILRRSERREPLAGTLGGRKLGFAGWLLDTDTRDLVRDADRAEKIALTTAEFKLLVAFLER HHHHHHCCCCCHHCCCCCEECEEEEEECCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC PRFVLTREQLLDITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD CCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHH VRELP HHHCC >Mature Secondary Structure ADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVM CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEEEEEEEEE MPGEDGLSAARRLSTGGGPPVLMLSALSDETDRVVGLEIGADDYLAKPFSPRELLARIKA ECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHH ILRRSERREPLAGTLGGRKLGFAGWLLDTDTRDLVRDADRAEKIALTTAEFKLLVAFLER HHHHHHCCCCCHHCCCCCEECEEEEEECCCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC PRFVLTREQLLDITSGRSADVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD CCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHH VRELP HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]