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The map label for this gene is 86749137

Identifier: 86749137

GI number: 86749137

Start: 2291381

End: 2293039

Strand: Reverse

Name: 86749137

Synonym: RPB_2014

Alternate gene names: NA

Gene position: 2293039-2291381 (Counterclockwise)

Preceding gene: 86749139

Following gene: 86749135

Centisome position: 43.01

GC content: 69.92

Gene sequence:

>1659_bases
GTGGCCGCCGCGGCGCAGGAGCCGCCGCCCGCCCCTCCTGGAACAGCCATGTCCGATTCCGACGTGCTGATCATCGGCGC
CGGTCACAACGGCCTCACCTGCGCCGCCTATCTGGCGCAGGCCGGGCTGACGGTGAAGGTCGTCGAGCGCCGCAGCGTGG
TCGGCGGCGCCGCGGTGACTCAGGAATTTCATCCCGGCTTCCGCAATTCGGTCGCGGCCTACACCGTCAGCCTGCTCAAC
CCCAAGGTGATCGCCGACCTGAAGCTCGCCGAGCACGGGCTGCGCATCGTCGAGCGCCGGGCGCAGAACTTCCTGCCCGA
CCCGAACGGCAAATATCTGCTGACCGGGGCCAAATACACTGCCAGATCGGTGGCGCATCTCAGCAAGCCCGACGCCGGCA
AGATCGACGGTTTCACCGCCGAGTTGGAGACCATCGCCGACGTGCTGCGGCATTTCGTGCTGCGGGCGCCGCCCAATCTG
GTCGAGCGCTTCGGCGTCGGCGCCGTTCGCGAGGGCCTCGCCGCGCTCGGCGCCGCCAACCGGCTGCGCGCGCTGACGCT
GGAGCAGCAGCGGCTGCTGCTCGATCTGTTCACCTGCTCGGCCGGTGAGATGCTCGACGCGCGGTTCGAGCACGATCTGG
TCAAGGCGCTGTTCGGCTTCGACGCCATCGTCGGCAATTACGCCAGCCCCTACGCCGCCGGCTCCGCCTACGTCATGCTG
CACCACGCCTTCGGCGAGGTGAACGGCAGGAAGGGCGTCTGGGGCCATGCGGTCGGCGGGATGGGGGCGATTTCGCAAGC
CATGGCCGCCGCAGCCCGCGCCGCCGGTGCCGAGATCGAAACCTCGGCCGGCGTCCGCGAGGTGCTGGTCGAGAAGGACC
GGGTGGTCGGCGTCACGCTCGACGACGGCCGCGGCCTGCGGGCGAAATACGTCGCCGCCAACGTCAATCCGAAGCTGCTC
TACACCAGGCTGCTACCGAAGGATGCGCTGCCGGGGGATGTCCACCGCCGCATGACCGCGTGGAAGAACGGCTCCGGCAC
CTTCCGCATGAATGTCGCGTTGGCCGGCCTGCCCTCGTTCACGGCGCTGCCCGGCACCGGCGACCATCTCACCGCCGGCA
TCATCATCGCCCCCGGCCTCGATTACATGGACCGCGCCTGGAGCGACGCACGCGCGCACGGCTGGAGCCGCGAGCCGGTG
GTCGAGATGCTGATCCCATCGACGCTGGACGAATCCCTGGCCCCGCCCGGCCGGCACGTCGCCAGCCTGTTCTGCCAGCA
CGTCGCGCCGCAACTGCCCGGTGGCGTGTCCTGGGACGACCGCCGCGACGAGGTCGCCGATCTAATGATCGCCACCGTCG
ACCGCTACGCCCCCGGCTTCGCCGCCAGCGTGCTCGGCCGCCAGATCCTGTCGCCGCTCGATCTCGAGCGCGATTTCGGC
CTGCTCGGCGGCGACATTTTTCACGGCGCGCTGAGCCTGAACCAGCTGTTCTCGGCCCGGCCGATGCTCGGCCATGCCGA
CTACCGCGGGCCGCTGAAGGGCCTCTACCACTGCGGTAGCGGCGCCCATCCCGGCGGCGGGGTCACCGGCGCCCCCGGCC
ACAACGCCGCAGCCGCGATCCTCAACGATCACCGCAGCCTGTTCACAAAGCGTGGATAA

Upstream 100 bases:

>100_bases
ATGGCTGCTGAGCGGCCCGTGGACCATGGCTGGGCGCGGCCCTTGTGCCGATCGGCCGGTCTTTGATATTCCATCCCTGA
TGACGGAGTGTGGACTCCGT

Downstream 100 bases:

>100_bases
AGCTGTGCGTAAGCCTGTGGATAGGCTGTGGAAAAGTCGTGGTTAAAGCTGTGCGCGAATCTGTTGAAGCGCAGTTTCAA
TCGCGGGGACAAGCTGTGGA

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 551

Protein sequence:

>552_residues
MAAAAQEPPPAPPGTAMSDSDVLIIGAGHNGLTCAAYLAQAGLTVKVVERRSVVGGAAVTQEFHPGFRNSVAAYTVSLLN
PKVIADLKLAEHGLRIVERRAQNFLPDPNGKYLLTGAKYTARSVAHLSKPDAGKIDGFTAELETIADVLRHFVLRAPPNL
VERFGVGAVREGLAALGAANRLRALTLEQQRLLLDLFTCSAGEMLDARFEHDLVKALFGFDAIVGNYASPYAAGSAYVML
HHAFGEVNGRKGVWGHAVGGMGAISQAMAAAARAAGAEIETSAGVREVLVEKDRVVGVTLDDGRGLRAKYVAANVNPKLL
YTRLLPKDALPGDVHRRMTAWKNGSGTFRMNVALAGLPSFTALPGTGDHLTAGIIIAPGLDYMDRAWSDARAHGWSREPV
VEMLIPSTLDESLAPPGRHVASLFCQHVAPQLPGGVSWDDRRDEVADLMIATVDRYAPGFAASVLGRQILSPLDLERDFG
LLGGDIFHGALSLNQLFSARPMLGHADYRGPLKGLYHCGSGAHPGGGVTGAPGHNAAAAILNDHRSLFTKRG

Sequences:

>Translated_552_residues
MAAAAQEPPPAPPGTAMSDSDVLIIGAGHNGLTCAAYLAQAGLTVKVVERRSVVGGAAVTQEFHPGFRNSVAAYTVSLLN
PKVIADLKLAEHGLRIVERRAQNFLPDPNGKYLLTGAKYTARSVAHLSKPDAGKIDGFTAELETIADVLRHFVLRAPPNL
VERFGVGAVREGLAALGAANRLRALTLEQQRLLLDLFTCSAGEMLDARFEHDLVKALFGFDAIVGNYASPYAAGSAYVML
HHAFGEVNGRKGVWGHAVGGMGAISQAMAAAARAAGAEIETSAGVREVLVEKDRVVGVTLDDGRGLRAKYVAANVNPKLL
YTRLLPKDALPGDVHRRMTAWKNGSGTFRMNVALAGLPSFTALPGTGDHLTAGIIIAPGLDYMDRAWSDARAHGWSREPV
VEMLIPSTLDESLAPPGRHVASLFCQHVAPQLPGGVSWDDRRDEVADLMIATVDRYAPGFAASVLGRQILSPLDLERDFG
LLGGDIFHGALSLNQLFSARPMLGHADYRGPLKGLYHCGSGAHPGGGVTGAPGHNAAAAILNDHRSLFTKRG
>Mature_551_residues
AAAAQEPPPAPPGTAMSDSDVLIIGAGHNGLTCAAYLAQAGLTVKVVERRSVVGGAAVTQEFHPGFRNSVAAYTVSLLNP
KVIADLKLAEHGLRIVERRAQNFLPDPNGKYLLTGAKYTARSVAHLSKPDAGKIDGFTAELETIADVLRHFVLRAPPNLV
ERFGVGAVREGLAALGAANRLRALTLEQQRLLLDLFTCSAGEMLDARFEHDLVKALFGFDAIVGNYASPYAAGSAYVMLH
HAFGEVNGRKGVWGHAVGGMGAISQAMAAAARAAGAEIETSAGVREVLVEKDRVVGVTLDDGRGLRAKYVAANVNPKLLY
TRLLPKDALPGDVHRRMTAWKNGSGTFRMNVALAGLPSFTALPGTGDHLTAGIIIAPGLDYMDRAWSDARAHGWSREPVV
EMLIPSTLDESLAPPGRHVASLFCQHVAPQLPGGVSWDDRRDEVADLMIATVDRYAPGFAASVLGRQILSPLDLERDFGL
LGGDIFHGALSLNQLFSARPMLGHADYRGPLKGLYHCGSGAHPGGGVTGAPGHNAAAAILNDHRSLFTKRG

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=553, Percent_Identity=40.8679927667269, Blast_Score=376, Evalue=1e-104,
Organism=Caenorhabditis elegans, GI17540238, Length=524, Percent_Identity=38.7404580152672, Blast_Score=355, Evalue=4e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58337; Mature: 58206

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAAQEPPPAPPGTAMSDSDVLIIGAGHNGLTCAAYLAQAGLTVKVVERRSVVGGAAVT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHHHCCHHHH
QEFHPGFRNSVAAYTVSLLNPKVIADLKLAEHGLRIVERRAQNFLPDPNGKYLLTGAKYT
HHHCCCHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH
ARSVAHLSKPDAGKIDGFTAELETIADVLRHFVLRAPPNLVERFGVGAVREGLAALGAAN
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
RLRALTLEQQRLLLDLFTCSAGEMLDARFEHDLVKALFGFDAIVGNYASPYAAGSAYVML
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
HHAFGEVNGRKGVWGHAVGGMGAISQAMAAAARAAGAEIETSAGVREVLVEKDRVVGVTL
EEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEE
DDGRGLRAKYVAANVNPKLLYTRLLPKDALPGDVHRRMTAWKNGSGTFRMNVALAGLPSF
CCCCCCEEEEEEECCCHHEEEEECCCCCCCCHHHHHHHHHEECCCCEEEEEEEEECCCCC
TALPGTGDHLTAGIIIAPGLDYMDRAWSDARAHGWSREPVVEMLIPSTLDESLAPPGRHV
CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHCCCCHHHH
ASLFCQHVAPQLPGGVSWDDRRDEVADLMIATVDRYAPGFAASVLGRQILSPLDLERDFG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
LLGGDIFHGALSLNQLFSARPMLGHADYRGPLKGLYHCGSGAHPGGGVTGAPGHNAAAAI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
LNDHRSLFTKRG
HHHHHHHHHCCC
>Mature Secondary Structure 
AAAAQEPPPAPPGTAMSDSDVLIIGAGHNGLTCAAYLAQAGLTVKVVERRSVVGGAAVT
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHHHCCHHHH
QEFHPGFRNSVAAYTVSLLNPKVIADLKLAEHGLRIVERRAQNFLPDPNGKYLLTGAKYT
HHHCCCHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH
ARSVAHLSKPDAGKIDGFTAELETIADVLRHFVLRAPPNLVERFGVGAVREGLAALGAAN
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
RLRALTLEQQRLLLDLFTCSAGEMLDARFEHDLVKALFGFDAIVGNYASPYAAGSAYVML
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
HHAFGEVNGRKGVWGHAVGGMGAISQAMAAAARAAGAEIETSAGVREVLVEKDRVVGVTL
EEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCEEEEEE
DDGRGLRAKYVAANVNPKLLYTRLLPKDALPGDVHRRMTAWKNGSGTFRMNVALAGLPSF
CCCCCCEEEEEEECCCHHEEEEECCCCCCCCHHHHHHHHHEECCCCEEEEEEEEECCCCC
TALPGTGDHLTAGIIIAPGLDYMDRAWSDARAHGWSREPVVEMLIPSTLDESLAPPGRHV
CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHCCCCHHHH
ASLFCQHVAPQLPGGVSWDDRRDEVADLMIATVDRYAPGFAASVLGRQILSPLDLERDFG
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
LLGGDIFHGALSLNQLFSARPMLGHADYRGPLKGLYHCGSGAHPGGGVTGAPGHNAAAAI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
LNDHRSLFTKRG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]