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The map label for this gene is erfK [H]

Identifier: 86749040

GI number: 86749040

Start: 2190834

End: 2192054

Strand: Direct

Name: erfK [H]

Synonym: RPB_1917

Alternate gene names: 86749040

Gene position: 2190834-2192054 (Clockwise)

Preceding gene: 86749038

Following gene: 86749042

Centisome position: 41.09

GC content: 68.88

Gene sequence:

>1221_bases
ATGATGAACAATCGAATCTTGACGTTGTTGGCGACGGTTGCGGCGATCTCGGCCGGAACGTCGGTGGTGCACGCGCAAAA
CTATCCGTCTGCGCCCGGATCCTATGTAACGCCGGCGCCGGGCGATTATCGCCAGGAGATGCCGAATTTTGACAATGTCG
ACGACGAGGATGGCATCGGATCCTCTGCGGCGCTGCCGCCGCCGGGTTTGGTGACCTCGCCGGACGATCCGCGCTACGGA
CGTCCCTCGAGCGCGCCGGTCTATTCCGATCGCGCTCCCGTGCCGCAGGGCCCGGTGATGTCGCCGGACGACCCGCGCTA
TGGTCGCCCGATGGGCGCCCCGCCGGTCTACTCGGAGCGCGCTCCGGTGCCCCAGGGGCCGGTGATGTCGCCCGATGATC
CGCGCTACGGCCGGCCCGCCGGTCCGCCGTCGGTGATCTACTCCAATCGCGGCGACGGTTCGCTGCGCCCGCCCGAGGGT
GTTGCCGGCGCCGGACAGCCGGGCGTTCCCCAGGTCGCGACCGGCTCGGTCCCAGCGGCTCCGCAGATCGGCGCCGACGG
CCGGCCGCTTCAGGTGGCGGCGCTGCCGCCCGAGGAGCAGCCGGACGCCGATCAAGAATTCCAGTTGCCGCAACATCTGC
GCCGGCAGGAGGTTGCGTTCCCGACCAAGGAGCCGGCCGGCACCATCGTGGTCGATACCGGCAACACCTATCTGTATTAC
ATACTCGGCAACGGCCGCGCCATGCGCTATGGCGTCCGCGTCGGGCGCGACGGTTTCACCTGGAACGGCGTACAGAAAGT
CAGCCGCAAGGCGGAGTGGCCGGATTGGCATCCGCCGACCGAGATGATCGAGCGCCAGCCCTATCTGCCGCGCTTCATGG
CTGGCGGCCCCGGCAATCCGATGGGCGCGCGGGCGATGTATCTCGGCTCGACGGTGTACCGAATCCACGGCACCAATCAG
CCTTCGACCATCGGCAAGTTCGTGTCGTCGGGCTGCATCGGCATGCTGAACGACGACGTCAGCGACCTGTTCGAGCGCGT
CAAGGTCGGCACCCGCGTCGTCGTGTTGCCGGGCGGCGCGCCGCCCACGCCGACCGCGAGTGCCCAGTCGCCGCAGCCGG
TTGCATCGGCCCAGCCGCCGCAGCAATCGCTGCAGATGTCCGTTCCCGGAACGCAGCCGACATCGGTGGCGCCGCTGCCG
CCCCCCGTGACGATCCGCTGA

Upstream 100 bases:

>100_bases
GAATTTGGCGTGAATGTGCCGGTCTTGTCTTGAATGTGCCGCGATCCTGCGGCATCTGCCCATGAGCGATCCGGTCTCGG
CTGCGGTTTACAAACGGGCG

Downstream 100 bases:

>100_bases
CATCGAGAAGCTCGCCAAAAAGCCCGCGCAGAGCGATCTGCGCGGGCTTTTTGCTGAGGTCGATCGGCCGGCTTCGCGGT
GAGCTTCAGATCTGGCGCGG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNFDNVDDEDGIGSSAALPPPGLVTSPDDPRYG
RPSSAPVYSDRAPVPQGPVMSPDDPRYGRPMGAPPVYSERAPVPQGPVMSPDDPRYGRPAGPPSVIYSNRGDGSLRPPEG
VAGAGQPGVPQVATGSVPAAPQIGADGRPLQVAALPPEEQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYY
ILGNGRAMRYGVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNPMGARAMYLGSTVYRIHGTNQ
PSTIGKFVSSGCIGMLNDDVSDLFERVKVGTRVVVLPGGAPPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLP
PPVTIR

Sequences:

>Translated_406_residues
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNFDNVDDEDGIGSSAALPPPGLVTSPDDPRYG
RPSSAPVYSDRAPVPQGPVMSPDDPRYGRPMGAPPVYSERAPVPQGPVMSPDDPRYGRPAGPPSVIYSNRGDGSLRPPEG
VAGAGQPGVPQVATGSVPAAPQIGADGRPLQVAALPPEEQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYY
ILGNGRAMRYGVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNPMGARAMYLGSTVYRIHGTNQ
PSTIGKFVSSGCIGMLNDDVSDLFERVKVGTRVVVLPGGAPPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLP
PPVTIR
>Mature_406_residues
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNFDNVDDEDGIGSSAALPPPGLVTSPDDPRYG
RPSSAPVYSDRAPVPQGPVMSPDDPRYGRPMGAPPVYSERAPVPQGPVMSPDDPRYGRPAGPPSVIYSNRGDGSLRPPEG
VAGAGQPGVPQVATGSVPAAPQIGADGRPLQVAALPPEEQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYY
ILGNGRAMRYGVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNPMGARAMYLGSTVYRIHGTNQ
PSTIGKFVSSGCIGMLNDDVSDLFERVKVGTRVVVLPGGAPPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLP
PPVTIR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=156, Percent_Identity=39.1025641025641, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787040, Length=147, Percent_Identity=37.4149659863946, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787356, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 42915; Mature: 42915

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNFDNVDDEDGIG
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
SSAALPPPGLVTSPDDPRYGRPSSAPVYSDRAPVPQGPVMSPDDPRYGRPMGAPPVYSER
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APVPQGPVMSPDDPRYGRPAGPPSVIYSNRGDGSLRPPEGVAGAGQPGVPQVATGSVPAA
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PQIGADGRPLQVAALPPEEQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYY
CCCCCCCCEEEEEECCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCEEEEECCCEEEEE
ILGNGRAMRYGVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNP
EEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCC
MGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFERVKVGTRVVVLPGGA
CCCEEEEECCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHCCEEEEECCCC
PPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLPPPVTIR
CCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNFDNVDDEDGIG
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
SSAALPPPGLVTSPDDPRYGRPSSAPVYSDRAPVPQGPVMSPDDPRYGRPMGAPPVYSER
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APVPQGPVMSPDDPRYGRPAGPPSVIYSNRGDGSLRPPEGVAGAGQPGVPQVATGSVPAA
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PQIGADGRPLQVAALPPEEQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYY
CCCCCCCCEEEEEECCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCEEEEECCCEEEEE
ILGNGRAMRYGVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNP
EEECCEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCC
MGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFERVKVGTRVVVLPGGA
CCCEEEEECCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHCCEEEEECCCC
PPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLPPPVTIR
CCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]