Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 86748801

GI number: 86748801

Start: 1909886

End: 1910377

Strand: Reverse

Name: ygaD [C]

Synonym: RPB_1678

Alternate gene names: 86748801

Gene position: 1910377-1909886 (Counterclockwise)

Preceding gene: 86748802

Following gene: 86748798

Centisome position: 35.83

GC content: 69.72

Gene sequence:

>492_bases
ATGATGCAGGATCTCGTTCCCCTCGCCGAGAAGGTCGCGCTGCGACTGATCGCGCAGAAGCAGACCATCGCGGTGGCGGA
ATCGTCGACCGGCGGGCTGATCGCCGCGGCGCTGCTCGCAGTGCCGGGGGCGTCGGCCTATTTCCTCGGCTCCGCGGTGG
TCTATACCCGCGAGGCCCGGCGCATCCTGATGGACATTCCCGATCCGCAGATGAAGGGGCTGCGCTCGTCGTCGGAGCCC
TATGCTGAGCTGCTGGCGCGGCAGATGCGCGCGCGCCTGTCCTCCGACTGGGCGCTGTCGGAGACCGGCGCGGCCGGCCC
CGGCGGCAACCGCTACGGCGACGCCGCCGGCCACACCTGCATCGCGGTCGCAGGCCCCACGCAGGCGGTGATGACGCTGG
AGACGGCGAGCAGCAACCGGCTCGACAACATGCACGTGTTCGCAAACACCGCGCTGACGTTCCTGCTGCACACGATGGCG
CAGCGGGATTGA

Upstream 100 bases:

>100_bases
AGATCGCGCTCGCAGCACGCGCCGCCATGGTCATCATGGCGGCGCGGCGATCGACCAACACCCGCGGCTGCTGTGGCGAG
GGCACAGCTGGAGACAAACG

Downstream 100 bases:

>100_bases
GCCGGGTCAGGCGCGCGGATCGGCGCGGGGCCGGCGAACAGCGCTGCGATCGCCATCGCAGACGAAAAAGGCGGCCGCTG
GCCGGCCGCCCTTCGATTTC

Product: CinA-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MMQDLVPLAEKVALRLIAQKQTIAVAESSTGGLIAAALLAVPGASAYFLGSAVVYTREARRILMDIPDPQMKGLRSSSEP
YAELLARQMRARLSSDWALSETGAAGPGGNRYGDAAGHTCIAVAGPTQAVMTLETASSNRLDNMHVFANTALTFLLHTMA
QRD

Sequences:

>Translated_163_residues
MMQDLVPLAEKVALRLIAQKQTIAVAESSTGGLIAAALLAVPGASAYFLGSAVVYTREARRILMDIPDPQMKGLRSSSEP
YAELLARQMRARLSSDWALSETGAAGPGGNRYGDAAGHTCIAVAGPTQAVMTLETASSNRLDNMHVFANTALTFLLHTMA
QRD
>Mature_163_residues
MMQDLVPLAEKVALRLIAQKQTIAVAESSTGGLIAAALLAVPGASAYFLGSAVVYTREARRILMDIPDPQMKGLRSSSEP
YAELLARQMRARLSSDWALSETGAAGPGGNRYGDAAGHTCIAVAGPTQAVMTLETASSNRLDNMHVFANTALTFLLHTMA
QRD

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17261; Mature: 17261

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQDLVPLAEKVALRLIAQKQTIAVAESSTGGLIAAALLAVPGASAYFLGSAVVYTREAR
CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RILMDIPDPQMKGLRSSSEPYAELLARQMRARLSSDWALSETGAAGPGGNRYGDAAGHTC
HHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
IAVAGPTQAVMTLETASSNRLDNMHVFANTALTFLLHTMAQRD
EEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMQDLVPLAEKVALRLIAQKQTIAVAESSTGGLIAAALLAVPGASAYFLGSAVVYTREAR
CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RILMDIPDPQMKGLRSSSEPYAELLARQMRARLSSDWALSETGAAGPGGNRYGDAAGHTC
HHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
IAVAGPTQAVMTLETASSNRLDNMHVFANTALTFLLHTMAQRD
EEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA