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The map label for this gene is dppB [C]

Identifier: 86748773

GI number: 86748773

Start: 1879388

End: 1880359

Strand: Reverse

Name: dppB [C]

Synonym: RPB_1650

Alternate gene names: 86748773

Gene position: 1880359-1879388 (Counterclockwise)

Preceding gene: 86748774

Following gene: 86748772

Centisome position: 35.27

GC content: 64.3

Gene sequence:

>972_bases
ATGCTTGCATTCATTGCCCAGAGAATCGGCAAGGCCGTGGTCGTCTTGCTCGCGATCGTCGTGCTCAACTTCTTCCTGAT
CCGCCTTGCGCCCGGCGATCCGGCATTGGTGATGGCCGGCGAAGCCGGCGCGGGCGATCAGCTCTTCATCTCCCAGCTCC
GCGAGAAATTCGGCCTCGACAAGCCGATGCCGGTGCAGCTCTTTCTATACGTCAAGGGAATCCTCAGTTTCGATCTCGGC
TATTCCTTCCGCCAGCAGATGCCGGTGTCAAAGCTGATCCTCGACCGGCTGCCGGCGACGATGCTGCTGACCGGCACGGC
TTTTGCGATCTCGCTGGCGTTCGGCATCATGTTCGGCGCGCTGGCGGCGCGGCGGGCCGGCACCTGGGCGGACACGGCGA
TCACCGTGCTGGCGCTGATCTTCTACGCCACGCCGCTGTTCTGGATCGCGCTGATGGCGATCCTGCTGTTTTCGGTCACG
ATGGAATGGCTGCCGAGCTTCGGCTACAAGACGGTCGGCGCCAACTACACCGGTCTCGCCCACGTCCTCGACGTCGGAGC
CCACCTGATCTTGCCGGCGACGACGATCGGCCTGTTCTTCATGGCCACTTATGCCCGCATGACGCGCGCCTCGATGCTCG
AGGTCAAGCGGCTCGATTTCGTCAAGACGGCGCGCGCCAAGGGCCTGCGCGACGCCGTGATCCAGCGTCGCCACGTGCTG
CGCAACGCGCTGCTGCCGGTGGTGACGCTCGCCGGCCTGCAGGCCGGCACATTGGTCGGCGGCGCCGTGCTCACCGAAAC
CGTGTTCGCCTGGCCGGGCATCGGCCGGCTGATGTACGAGGCTCTGTTGCAACGCGACTACAACCTGTTGCTCGGCGTCT
TCGTGGTGTGTTCGGCGATGGTGCTGGTGTTCAACCTGATCACCGACCTGATCTACCGCTCGGTCGATCCCCGTATCGAG
TACGCGGCATGA

Upstream 100 bases:

>100_bases
CTGGCTCGACAAGTAACTTCCCCGACAAGCCGGCGGCGGCGCTCCGTGCCGCCGCCGGTTGACTTCCGAAGCCTAATCTC
GAACGCAATGGAAACCGACG

Downstream 100 bases:

>100_bases
AACAATTCTGGCGATTGCTGGTACGCAACCCCGGCGGGCTGATCGGGCTGATCATCCTGCTGGTCGTGATCACGGTCGCC
GTGATCGGCCCGCTGCTGTT

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLAFIAQRIGKAVVVLLAIVVLNFFLIRLAPGDPALVMAGEAGAGDQLFISQLREKFGLDKPMPVQLFLYVKGILSFDLG
YSFRQQMPVSKLILDRLPATMLLTGTAFAISLAFGIMFGALAARRAGTWADTAITVLALIFYATPLFWIALMAILLFSVT
MEWLPSFGYKTVGANYTGLAHVLDVGAHLILPATTIGLFFMATYARMTRASMLEVKRLDFVKTARAKGLRDAVIQRRHVL
RNALLPVVTLAGLQAGTLVGGAVLTETVFAWPGIGRLMYEALLQRDYNLLLGVFVVCSAMVLVFNLITDLIYRSVDPRIE
YAA

Sequences:

>Translated_323_residues
MLAFIAQRIGKAVVVLLAIVVLNFFLIRLAPGDPALVMAGEAGAGDQLFISQLREKFGLDKPMPVQLFLYVKGILSFDLG
YSFRQQMPVSKLILDRLPATMLLTGTAFAISLAFGIMFGALAARRAGTWADTAITVLALIFYATPLFWIALMAILLFSVT
MEWLPSFGYKTVGANYTGLAHVLDVGAHLILPATTIGLFFMATYARMTRASMLEVKRLDFVKTARAKGLRDAVIQRRHVL
RNALLPVVTLAGLQAGTLVGGAVLTETVFAWPGIGRLMYEALLQRDYNLLLGVFVVCSAMVLVFNLITDLIYRSVDPRIE
YAA
>Mature_323_residues
MLAFIAQRIGKAVVVLLAIVVLNFFLIRLAPGDPALVMAGEAGAGDQLFISQLREKFGLDKPMPVQLFLYVKGILSFDLG
YSFRQQMPVSKLILDRLPATMLLTGTAFAISLAFGIMFGALAARRAGTWADTAITVLALIFYATPLFWIALMAILLFSVT
MEWLPSFGYKTVGANYTGLAHVLDVGAHLILPATTIGLFFMATYARMTRASMLEVKRLDFVKTARAKGLRDAVIQRRHVL
RNALLPVVTLAGLQAGTLVGGAVLTETVFAWPGIGRLMYEALLQRDYNLLLGVFVVCSAMVLVFNLITDLIYRSVDPRIE
YAA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=39.9408284023669, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787053, Length=321, Percent_Identity=35.202492211838, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=36.0606060606061, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=32.6086956521739, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=35.8433734939759, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=33.3333333333333, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788504, Length=373, Percent_Identity=30.0268096514745, Blast_Score=134, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35328; Mature: 35328

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFIAQRIGKAVVVLLAIVVLNFFLIRLAPGDPALVMAGEAGAGDQLFISQLREKFGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
KPMPVQLFLYVKGILSFDLGYSFRQQMPVSKLILDRLPATMLLTGTAFAISLAFGIMFGA
CCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAARRAGTWADTAITVLALIFYATPLFWIALMAILLFSVTMEWLPSFGYKTVGANYTGLA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHH
HVLDVGAHLILPATTIGLFFMATYARMTRASMLEVKRLDFVKTARAKGLRDAVIQRRHVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RNALLPVVTLAGLQAGTLVGGAVLTETVFAWPGIGRLMYEALLQRDYNLLLGVFVVCSAM
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVFNLITDLIYRSVDPRIEYAA
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLAFIAQRIGKAVVVLLAIVVLNFFLIRLAPGDPALVMAGEAGAGDQLFISQLREKFGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
KPMPVQLFLYVKGILSFDLGYSFRQQMPVSKLILDRLPATMLLTGTAFAISLAFGIMFGA
CCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LAARRAGTWADTAITVLALIFYATPLFWIALMAILLFSVTMEWLPSFGYKTVGANYTGLA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHH
HVLDVGAHLILPATTIGLFFMATYARMTRASMLEVKRLDFVKTARAKGLRDAVIQRRHVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RNALLPVVTLAGLQAGTLVGGAVLTETVFAWPGIGRLMYEALLQRDYNLLLGVFVVCSAM
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVFNLITDLIYRSVDPRIEYAA
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]