Click here to switch to the map view.

The map label for this gene is 86747668

Identifier: 86747668

GI number: 86747668

Start: 606952

End: 607452

Strand: Direct

Name: 86747668

Synonym: RPB_0542

Alternate gene names: NA

Gene position: 606952-607452 (Clockwise)

Preceding gene: 86747667

Following gene: 86747669

Centisome position: 11.38

GC content: 57.09

Gene sequence:

>501_bases
ATGACGACCAGTTCGAAACTACGTCCGCAGCCGGAACCATCGGCGACCTCGTCCCCGTGCTACGAGGGGGATCTTTACGG
TTGGGTTCAGCATCAAGTCGCGCTGCTGAAGGCCGGCAAGCTGTCGGAGATCGATGCCGGGAATGTCGCCGAGGAGTTGT
CGGACGTGGGCAGCGAGCAGTACGACAAACTCGAAAGCGCGATTCGCGTTGTGCTGTTGCATCTCATGAAGTGGGATCAC
CAGCCGACGCATCGTTCCAAGAGCTGGGTTTTTTCGATCCGAACTCAGCGCCGACATATCGTCAAGGTTCTCAAGAAGAA
CCCCAGCCTAAGGCCGCATATTCCTGAAGCGATCGGTGATGCCTACCACGATGCTCGCGACGAAGCCCAACAGGAAACCG
GCCTCCCGGCAAGCGTCTTCGAGTTGACCTGTCCGTATGATTGGGATGCGATCCAATCTCGTGCCGTTGAGTTTGAAGAC
ATCCGCTCACCGGAAGAGTAA

Upstream 100 bases:

>100_bases
TGTTGCGATGACGTAAAGCCGGGCCCTCTCCCCGGGTGGGAGAGGGTGCCTTCGCGGAGCGGGCGCCCGCCTGTTCACCA
CGGCGCTGTGAGGATTGGCG

Downstream 100 bases:

>100_bases
TTTCTCAGCATGACCACATCCAACACCAAATTCCGCACCGGATCGAAGGAAGCGCCGACCGAGCCGTTCAAGCGGGCGGT
GACGTCGTGCCTGCGGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTTSSKLRPQPEPSATSSPCYEGDLYGWVQHQVALLKAGKLSEIDAGNVAEELSDVGSEQYDKLESAIRVVLLHLMKWDH
QPTHRSKSWVFSIRTQRRHIVKVLKKNPSLRPHIPEAIGDAYHDARDEAQQETGLPASVFELTCPYDWDAIQSRAVEFED
IRSPEE

Sequences:

>Translated_166_residues
MTTSSKLRPQPEPSATSSPCYEGDLYGWVQHQVALLKAGKLSEIDAGNVAEELSDVGSEQYDKLESAIRVVLLHLMKWDH
QPTHRSKSWVFSIRTQRRHIVKVLKKNPSLRPHIPEAIGDAYHDARDEAQQETGLPASVFELTCPYDWDAIQSRAVEFED
IRSPEE
>Mature_165_residues
TTSSKLRPQPEPSATSSPCYEGDLYGWVQHQVALLKAGKLSEIDAGNVAEELSDVGSEQYDKLESAIRVVLLHLMKWDHQ
PTHRSKSWVFSIRTQRRHIVKVLKKNPSLRPHIPEAIGDAYHDARDEAQQETGLPASVFELTCPYDWDAIQSRAVEFEDI
RSPEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18821; Mature: 18690

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSKLRPQPEPSATSSPCYEGDLYGWVQHQVALLKAGKLSEIDAGNVAEELSDVGSEQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHH
YDKLESAIRVVLLHLMKWDHQPTHRSKSWVFSIRTQRRHIVKVLKKNPSLRPHIPEAIGD
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AYHDARDEAQQETGLPASVFELTCPYDWDAIQSRAVEFEDIRSPEE
HHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHCCCHHHCCCCCC
>Mature Secondary Structure 
TTSSKLRPQPEPSATSSPCYEGDLYGWVQHQVALLKAGKLSEIDAGNVAEELSDVGSEQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHH
YDKLESAIRVVLLHLMKWDHQPTHRSKSWVFSIRTQRRHIVKVLKKNPSLRPHIPEAIGD
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AYHDARDEAQQETGLPASVFELTCPYDWDAIQSRAVEFEDIRSPEE
HHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHHHCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA