| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yoaV [H]
Identifier: 86747649
GI number: 86747649
Start: 584355
End: 585272
Strand: Reverse
Name: yoaV [H]
Synonym: RPB_0523
Alternate gene names: 86747649
Gene position: 585272-584355 (Counterclockwise)
Preceding gene: 86747650
Following gene: 86747648
Centisome position: 10.98
GC content: 66.88
Gene sequence:
>918_bases ATGTCGGCACAGATAGGCGGCGCGGCTGCCCGGCCGCTGACCGCGGGCGCGATCGCCCTGATGCTGCTGTGCTGCTTCAG CTGGGGCTTCAACCAGATCGCCGTGAAGCTAGTGCTGCCGGACATCCCGCCCTTCCTGCAGGCGGCGATCCGCTCCGCCG GAGCCATGATCGTGATCCTGATCATCGCCCGGGCGCGCGGCGTGAAGCTGTTTCAGCGCGACGGCACGCTGAAGGCCGGG CTGCTCGCCGGCGTGCTGTTCGGGCTGGAATTCGTGCTGATCTATTATGGATTGACCCTGACCACGGCGTCGCGCGGGGT GGTGTTTCTCTATGTGGCGCCGTTTGTCGTGGCGCTGGGCGCCTACCATTTCCTCGGCGAGCGGCTGCGCGCCATGCAAT GGGCCGGGCTGGCGCTCAGCTTCGCCGGCGTGGCGGTGGCGATCGGGGTGCCGCAGCCCAATGTCGACGCCAAGGTGCTG CTCGGCGACCTGATGCTGGTCGGCGGCGGGGCACTGTGGGGTGCCACCACCCTGGTGGTGAAGGCGAGCCCGCTGCAGCG GGCCCCCGCCGAGAAGGGGCTGGCCTATCAGGTGGCGCTCTCGGTGCCGATTCTGCTGTTCGCGGCGCTGATTGCGGGCG AAACCATCGAGCAAACGCCCACCCCCCTGTCGCTGGCGCTGATGGCCTACCAGTCGATCTGGGTGGTGGGCCTGACCTTT CTGCTCTGGTTCGGCCTGGTGAAGACCTATTCGGCCAGCAAATTGTCGGCTTTTACCTTCTTCACCCCTTTATTCGGGGT GGCGGCGGGCTATCTGATCCTGCACGAACCGCTGACCCCGGCGTTCGGCTTCGCGGCACTGCTGGTCATGGCCGGGCTGT ATCTGGTCAACCGGCCCGGCAAGGTTCCGGCTTTGTGA
Upstream 100 bases:
>100_bases AGGAGCGTTGCTCGCACGCGAGCACGCCCGCGACAACACGGCGGCAAGCCGGAGGCGCAATGTCGATTTTCTCTTTCGCC GCACAGCAGACATCCGGCCG
Downstream 100 bases:
>100_bases GGCCGGATCTTGCGGTTCCGGGCGGCGGTGGCCAAGTCATCCCGGGGTTCCTGCACCCATTGATCCATTGCTGACTGTCA CCAAAACCTGATATTCCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSAQIGGAAARPLTAGAIALMLLCCFSWGFNQIAVKLVLPDIPPFLQAAIRSAGAMIVILIIARARGVKLFQRDGTLKAG LLAGVLFGLEFVLIYYGLTLTTASRGVVFLYVAPFVVALGAYHFLGERLRAMQWAGLALSFAGVAVAIGVPQPNVDAKVL LGDLMLVGGGALWGATTLVVKASPLQRAPAEKGLAYQVALSVPILLFAALIAGETIEQTPTPLSLALMAYQSIWVVGLTF LLWFGLVKTYSASKLSAFTFFTPLFGVAAGYLILHEPLTPAFGFAALLVMAGLYLVNRPGKVPAL
Sequences:
>Translated_305_residues MSAQIGGAAARPLTAGAIALMLLCCFSWGFNQIAVKLVLPDIPPFLQAAIRSAGAMIVILIIARARGVKLFQRDGTLKAG LLAGVLFGLEFVLIYYGLTLTTASRGVVFLYVAPFVVALGAYHFLGERLRAMQWAGLALSFAGVAVAIGVPQPNVDAKVL LGDLMLVGGGALWGATTLVVKASPLQRAPAEKGLAYQVALSVPILLFAALIAGETIEQTPTPLSLALMAYQSIWVVGLTF LLWFGLVKTYSASKLSAFTFFTPLFGVAAGYLILHEPLTPAFGFAALLVMAGLYLVNRPGKVPAL >Mature_304_residues SAQIGGAAARPLTAGAIALMLLCCFSWGFNQIAVKLVLPDIPPFLQAAIRSAGAMIVILIIARARGVKLFQRDGTLKAGL LAGVLFGLEFVLIYYGLTLTTASRGVVFLYVAPFVVALGAYHFLGERLRAMQWAGLALSFAGVAVAIGVPQPNVDAKVLL GDLMLVGGGALWGATTLVVKASPLQRAPAEKGLAYQVALSVPILLFAALIAGETIEQTPTPLSLALMAYQSIWVVGLTFL LWFGLVKTYSASKLSAFTFFTPLFGVAAGYLILHEPLTPAFGFAALLVMAGLYLVNRPGKVPAL
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32051; Mature: 31920
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQIGGAAARPLTAGAIALMLLCCFSWGFNQIAVKLVLPDIPPFLQAAIRSAGAMIVIL CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCHHHHHHHHCCCHHHHHH IIARARGVKLFQRDGTLKAGLLAGVLFGLEFVLIYYGLTLTTASRGVVFLYVAPFVVALG HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHH AYHFLGERLRAMQWAGLALSFAGVAVAIGVPQPNVDAKVLLGDLMLVGGGALWGATTLVV HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHEEEEE KASPLQRAPAEKGLAYQVALSVPILLFAALIAGETIEQTPTPLSLALMAYQSIWVVGLTF ECCCHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHH LLWFGLVKTYSASKLSAFTFFTPLFGVAAGYLILHEPLTPAFGFAALLVMAGLYLVNRPG HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCC KVPAL CCCCC >Mature Secondary Structure SAQIGGAAARPLTAGAIALMLLCCFSWGFNQIAVKLVLPDIPPFLQAAIRSAGAMIVIL CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCHHHHHHHHCCCHHHHHH IIARARGVKLFQRDGTLKAGLLAGVLFGLEFVLIYYGLTLTTASRGVVFLYVAPFVVALG HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHH AYHFLGERLRAMQWAGLALSFAGVAVAIGVPQPNVDAKVLLGDLMLVGGGALWGATTLVV HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHEEEEE KASPLQRAPAEKGLAYQVALSVPILLFAALIAGETIEQTPTPLSLALMAYQSIWVVGLTF ECCCHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHH LLWFGLVKTYSASKLSAFTFFTPLFGVAAGYLILHEPLTPAFGFAALLVMAGLYLVNRPG HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCC KVPAL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]