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The map label for this gene is palH [H]

Identifier: 86747571

GI number: 86747571

Start: 491316

End: 492596

Strand: Direct

Name: palH [H]

Synonym: RPB_0445

Alternate gene names: 86747571

Gene position: 491316-492596 (Clockwise)

Preceding gene: 86747565

Following gene: 86747574

Centisome position: 9.22

GC content: 67.06

Gene sequence:

>1281_bases
ATGGCCAGAACGACCAGGATCGTGTTGCTCGGCGCCAGCAGTGCGTCATTCGGCCTCAGCATGTTGCGCGATCTGTTCGC
CACGCCGGAGCTGCGCGGGTCGACGCTGGTGATGGTCGGGCTCGATGCGGCGAGGCTCGCGACCATGGCCGAGCTGGCGA
AGCTGCTGAACGCGACGACCGGCGCCGGCTTCGTCATCGAACACACCACCGACCGCCGCGCCGCGCTGGACGGCGCAAGC
TTCGTCATCAACGCCACCGCGATCGATCGCAACCGGCTGTGGAAGATGGATTTCGAGGTGCCGAAGAAGCACGGCATCCG
GCATCCGCTGGGTGAGAACGGTGGCCCCGGCGGATTGTTCTTCACGTTGCGGACGCTGCCGCTGGTGTTCGATTTCATCC
GCGACATCGAGGAGCTTTGCCCCGAGGCGCTGTTTCTCAACTACTCCAATCCGGAAAGCCGCATCGTGCTGGCGCTCGGG
CGCTATTCGAAGGTGCGCTGCATCGGCCTGTGTCACGGCATCTTCATGGGCCGCGACGCCGTCGCCGACATCATGGGACT
GCCGCGCGAGCGCGTCGAGGTGTGGGGCGCGGGGCTCAATCACTTCCAGTGCCTGCTGCAGATCCGCGACCGCCTCACCG
GCGAAGACCTCGCGCCGCGGCTGCGCGCGGCGGAGCAGAGCTTCGATCCCAATGCCTGGCGCTTCACCCGGCGGCTGTAT
CGCGCCTTCGGCCACTGGCTGACCTGCAGCGACGATCATCTCGGCGAGTATCTGGCTTACGGCTGGGAGGCCGGCGAGCG
CGGCTATGATTTCGCCGGCGACGACCGCAGCCGCGTCGAGACCCTGGCGCAGATCGACGCCGTGCTGGCCGGGACGATGC
CGATCCCACATTGGTGGACCGAGCCCTCGGGCGAGCGCGGCGCCGCGGTGATCGCCGCGATGCTGCACGACCAGAAGCGC
TTCATCGAATCCGGCATCGTGATGAACCGCGGCGTCATCCCCAATCTGCCGGCGGAGCTCGCCGTCGAGGTGCCGGTGAC
GGTCGACGCCGCCGGGGTGCATCCGGTGTCGCTCGGTCCACTACCAGATCCGATCGCCAAGCTGATGCTGATGCAGGCCA
GCGTGCAGCAACTCGCGGTCGAGGCGGCGGTGCACGCCTCGAAAGAACTCGCGCTGCAGGCGCTGCTGATCGACCCGGTG
GTCAACTCAGCGGTCGCCGCGGAAAAGATCCTCGACGAGCTGTGGGAGATCAACCGGCCCTATATCAGGGCGTGCGTGTA
G

Upstream 100 bases:

>100_bases
GGCAGCCCGTTGCACGCGACTCAAACGCGCAGCGCTTCGGACGGATGACGCGTGAGCCCCGCCATTGGCGGCTCATCGCC
GTGGGGGGATCGATCGCGCG

Downstream 100 bases:

>100_bases
CGATCCGCCGCCACGCTTGCTCCGTCATTGCGAGGAGCGCAGCGACGAAGCAATCCAGAGCGGCGTGCACAGAGCCCCTG
GATTGCTTCGCTTCGCTCGC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MARTTRIVLLGASSASFGLSMLRDLFATPELRGSTLVMVGLDAARLATMAELAKLLNATTGAGFVIEHTTDRRAALDGAS
FVINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLFFTLRTLPLVFDFIRDIEELCPEALFLNYSNPESRIVLALG
RYSKVRCIGLCHGIFMGRDAVADIMGLPRERVEVWGAGLNHFQCLLQIRDRLTGEDLAPRLRAAEQSFDPNAWRFTRRLY
RAFGHWLTCSDDHLGEYLAYGWEAGERGYDFAGDDRSRVETLAQIDAVLAGTMPIPHWWTEPSGERGAAVIAAMLHDQKR
FIESGIVMNRGVIPNLPAELAVEVPVTVDAAGVHPVSLGPLPDPIAKLMLMQASVQQLAVEAAVHASKELALQALLIDPV
VNSAVAAEKILDELWEINRPYIRACV

Sequences:

>Translated_426_residues
MARTTRIVLLGASSASFGLSMLRDLFATPELRGSTLVMVGLDAARLATMAELAKLLNATTGAGFVIEHTTDRRAALDGAS
FVINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLFFTLRTLPLVFDFIRDIEELCPEALFLNYSNPESRIVLALG
RYSKVRCIGLCHGIFMGRDAVADIMGLPRERVEVWGAGLNHFQCLLQIRDRLTGEDLAPRLRAAEQSFDPNAWRFTRRLY
RAFGHWLTCSDDHLGEYLAYGWEAGERGYDFAGDDRSRVETLAQIDAVLAGTMPIPHWWTEPSGERGAAVIAAMLHDQKR
FIESGIVMNRGVIPNLPAELAVEVPVTVDAAGVHPVSLGPLPDPIAKLMLMQASVQQLAVEAAVHASKELALQALLIDPV
VNSAVAAEKILDELWEINRPYIRACV
>Mature_425_residues
ARTTRIVLLGASSASFGLSMLRDLFATPELRGSTLVMVGLDAARLATMAELAKLLNATTGAGFVIEHTTDRRAALDGASF
VINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLFFTLRTLPLVFDFIRDIEELCPEALFLNYSNPESRIVLALGR
YSKVRCIGLCHGIFMGRDAVADIMGLPRERVEVWGAGLNHFQCLLQIRDRLTGEDLAPRLRAAEQSFDPNAWRFTRRLYR
AFGHWLTCSDDHLGEYLAYGWEAGERGYDFAGDDRSRVETLAQIDAVLAGTMPIPHWWTEPSGERGAAVIAAMLHDQKRF
IESGIVMNRGVIPNLPAELAVEVPVTVDAAGVHPVSLGPLPDPIAKLMLMQASVQQLAVEAAVHASKELALQALLIDPVV
NSAVAAEKILDELWEINRPYIRACV

Specific function: Alpha-glucosidase with broad specificity. Hydrolyzes maltose, palatinose, maltulose, trehalose, trehalulose, turanose, leucrose, sucrose and maltitol. Is not active against alpha- galactosides, e.g. melibiose, and alpha-mannosides. Shows an obligate requi

COG id: COG1486

COG function: function code G; Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 4 family [H]

Homologues:

Organism=Escherichia coli, GI1790560, Length=432, Percent_Identity=28.9351851851852, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788029, Length=451, Percent_Identity=26.8292682926829, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001088
- InterPro:   IPR022616
- InterPro:   IPR015955
- InterPro:   IPR016040 [H]

Pfam domain/function: PF02056 Glyco_hydro_4; PF11975 Glyco_hydro_4C [H]

EC number: =3.2.1.20 [H]

Molecular weight: Translated: 46811; Mature: 46679

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTTRIVLLGASSASFGLSMLRDLFATPELRGSTLVMVGLDAARLATMAELAKLLNATT
CCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
GAGFVIEHTTDRRAALDGASFVINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLF
CCCEEEEECCCHHHHCCCCEEEEEEEEECCCCEEEECCCCCHHCCCCCCCCCCCCCCHHH
FTLRTLPLVFDFIRDIEELCPEALFLNYSNPESRIVLALGRYSKVRCIGLCHGIFMGRDA
HHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHH
VADIMGLPRERVEVWGAGLNHFQCLLQIRDRLTGEDLAPRLRAAEQSFDPNAWRFTRRLY
HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
RAFGHWLTCSDDHLGEYLAYGWEAGERGYDFAGDDRSRVETLAQIDAVLAGTMPIPHWWT
HHHCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EPSGERGAAVIAAMLHDQKRFIESGIVMNRGVIPNLPAELAVEVPVTVDAAGVHPVSLGP
CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHEEECCEEEECCCCCCCCCCC
LPDPIAKLMLMQASVQQLAVEAAVHASKELALQALLIDPVVNSAVAAEKILDELWEINRP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YIRACV
HHHHCC
>Mature Secondary Structure 
ARTTRIVLLGASSASFGLSMLRDLFATPELRGSTLVMVGLDAARLATMAELAKLLNATT
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
GAGFVIEHTTDRRAALDGASFVINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLF
CCCEEEEECCCHHHHCCCCEEEEEEEEECCCCEEEECCCCCHHCCCCCCCCCCCCCCHHH
FTLRTLPLVFDFIRDIEELCPEALFLNYSNPESRIVLALGRYSKVRCIGLCHGIFMGRDA
HHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHH
VADIMGLPRERVEVWGAGLNHFQCLLQIRDRLTGEDLAPRLRAAEQSFDPNAWRFTRRLY
HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
RAFGHWLTCSDDHLGEYLAYGWEAGERGYDFAGDDRSRVETLAQIDAVLAGTMPIPHWWT
HHHCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
EPSGERGAAVIAAMLHDQKRFIESGIVMNRGVIPNLPAELAVEVPVTVDAAGVHPVSLGP
CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHEEECCEEEECCCCCCCCCCC
LPDPIAKLMLMQASVQQLAVEAAVHASKELALQALLIDPVVNSAVAAEKILDELWEINRP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YIRACV
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11274100 [H]