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The map label for this gene is yhcM [H]

Identifier: 86747408

GI number: 86747408

Start: 318976

End: 320157

Strand: Reverse

Name: yhcM [H]

Synonym: RPB_0282

Alternate gene names: 86747408

Gene position: 320157-318976 (Counterclockwise)

Preceding gene: 86747409

Following gene: 86747407

Centisome position: 6.0

GC content: 64.72

Gene sequence:

>1182_bases
ATGTCCCCGCCGCTCTCGTTTCGTCAACATTATCAGTCCCTGGTCGCCTCCGGTGCGATCGAAGCCGACCCCGCCCAGGC
GCGCGCGGTCGAAGCCTTCGGTGCGCTCGACGACACCCTGGCGAATTACAAGCCGCCGAAAAAGCAGGGTTTTCTCGGCC
GGCTGTTCGGCGGCGGCGAACCCGACAAGCCGCCGCGCGGGCTTTACGTCCATGGCGAGGTCGGCCGCGGCAAGACCATG
CTGATGGATTTGTTTTTCGATGCGTGTCCGGTGCCGCACAAGCGCCGCGCGCATTTCCACGAATTCATGGCCGAGGCCCA
CGAACGCATCAACGCCTTCCGACAGAACATCAAGCGCGGCGAAATCCCCGACGGCGACGTTATCGGGCTGACCGCGGCGT
CGATTTTCGAGGAAGCGTGGCTGCTGTGCTTCGATGAATTCCACGTGACCGACATCGCCGACGCGATGATTCTGTCGCGG
CTGTTCGGCAAGCTGTTCGAACTCGGCACCGTCGTCGTCGCGACCTCGAACGTTGCGCCCGACGATCTCTACAAAGGCGG
TCTTAACCGCGCGCTGTTCGTGCCGTTCATCGGCCAGGTCAAGCAGCACATGGAGGTGCTCCGGCTCGACGCCCGCACCG
ATTATCGGCTGGAGAAATTCGCCGGGATGAAAGTGTGGCTGGCCCCGGACGATGCCGAGGCCACCGCCGCGCTCGATCGC
GCCTGGAGCCGGATCACCGGCGGCGCCGCCGGCAAGCCGCGCGACATCGCGATCAAGGGCCGGCATCTGCACGTGCCGAA
ATCCGACCATCACGTGGCGCGTTTCGATTTCGCCGATCTTTGCGAAAAGCCGCTCGGCGCGTCGGACTATCTGCGGCTCG
CGCACGAATATCATACGCTGCTGATCGATCACGTGCCGGCGATGGACTATGCCGACCGCAACGCCGCCAAGCGCTTCATC
GCGTTGATCGACACGCTGTACGACAACGCGGTGAAGCTGATGGCGTCCGCCGCGGCCGAGCCGGCCGATCTCTACAGCGC
CTCCGAAGGCGTCGAGGCGATGGAGTTCAATCGGACGGTCTCGCGGCTGATCGAGATGGGCTCGGAATCCTATCTGGCGC
TGCCGCATGGCCGCAGCGACTCGCTCGCCTCCGGCGCCACGACCGGCTTGGTCGAGACCTAG

Upstream 100 bases:

>100_bases
GCTCAAACACACCGAAGAGACAAGGGCCGTCCGAACTGCATAGCCGCCAGCAAGAATCCCGGCTTGCATTTTGTCGCAGG
CTGAGGCGGTAAGGGCGTCC

Downstream 100 bases:

>100_bases
GCCTTTGGTTTCGATCGGTTTTGCGACGCAAACCCGTTCGACCCCGCACGAATACGCGGCGGCAATGCCCCGCCCCCGGC
TGGCCAACAATTGGGCGCTG

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSPPLSFRQHYQSLVASGAIEADPAQARAVEAFGALDDTLANYKPPKKQGFLGRLFGGGEPDKPPRGLYVHGEVGRGKTM
LMDLFFDACPVPHKRRAHFHEFMAEAHERINAFRQNIKRGEIPDGDVIGLTAASIFEEAWLLCFDEFHVTDIADAMILSR
LFGKLFELGTVVVATSNVAPDDLYKGGLNRALFVPFIGQVKQHMEVLRLDARTDYRLEKFAGMKVWLAPDDAEATAALDR
AWSRITGGAAGKPRDIAIKGRHLHVPKSDHHVARFDFADLCEKPLGASDYLRLAHEYHTLLIDHVPAMDYADRNAAKRFI
ALIDTLYDNAVKLMASAAAEPADLYSASEGVEAMEFNRTVSRLIEMGSESYLALPHGRSDSLASGATTGLVET

Sequences:

>Translated_393_residues
MSPPLSFRQHYQSLVASGAIEADPAQARAVEAFGALDDTLANYKPPKKQGFLGRLFGGGEPDKPPRGLYVHGEVGRGKTM
LMDLFFDACPVPHKRRAHFHEFMAEAHERINAFRQNIKRGEIPDGDVIGLTAASIFEEAWLLCFDEFHVTDIADAMILSR
LFGKLFELGTVVVATSNVAPDDLYKGGLNRALFVPFIGQVKQHMEVLRLDARTDYRLEKFAGMKVWLAPDDAEATAALDR
AWSRITGGAAGKPRDIAIKGRHLHVPKSDHHVARFDFADLCEKPLGASDYLRLAHEYHTLLIDHVPAMDYADRNAAKRFI
ALIDTLYDNAVKLMASAAAEPADLYSASEGVEAMEFNRTVSRLIEMGSESYLALPHGRSDSLASGATTGLVET
>Mature_392_residues
SPPLSFRQHYQSLVASGAIEADPAQARAVEAFGALDDTLANYKPPKKQGFLGRLFGGGEPDKPPRGLYVHGEVGRGKTML
MDLFFDACPVPHKRRAHFHEFMAEAHERINAFRQNIKRGEIPDGDVIGLTAASIFEEAWLLCFDEFHVTDIADAMILSRL
FGKLFELGTVVVATSNVAPDDLYKGGLNRALFVPFIGQVKQHMEVLRLDARTDYRLEKFAGMKVWLAPDDAEATAALDRA
WSRITGGAAGKPRDIAIKGRHLHVPKSDHHVARFDFADLCEKPLGASDYLRLAHEYHTLLIDHVPAMDYADRNAAKRFIA
LIDTLYDNAVKLMASAAAEPADLYSASEGVEAMEFNRTVSRLIEMGSESYLALPHGRSDSLASGATTGLVET

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=399, Percent_Identity=38.0952380952381, Blast_Score=272, Evalue=3e-73,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=37.4331550802139, Blast_Score=240, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI17505769, Length=410, Percent_Identity=36.0975609756098, Blast_Score=244, Evalue=4e-65,
Organism=Saccharomyces cerevisiae, GI6320783, Length=403, Percent_Identity=33.4987593052109, Blast_Score=197, Evalue=2e-51,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=34.4339622641509, Blast_Score=224, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43249; Mature: 43117

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPLSFRQHYQSLVASGAIEADPAQARAVEAFGALDDTLANYKPPKKQGFLGRLFGGGE
CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
PDKPPRGLYVHGEVGRGKTMLMDLFFDACPVPHKRRAHFHEFMAEAHERINAFRQNIKRG
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
EIPDGDVIGLTAASIFEEAWLLCFDEFHVTDIADAMILSRLFGKLFELGTVVVATSNVAP
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC
DDLYKGGLNRALFVPFIGQVKQHMEVLRLDARTDYRLEKFAGMKVWLAPDDAEATAALDR
HHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCHHHHHHHH
AWSRITGGAAGKPRDIAIKGRHLHVPKSDHHVARFDFADLCEKPLGASDYLRLAHEYHTL
HHHHHCCCCCCCCCEEEEECCEEECCCCCCCEEECCHHHHHCCCCCHHHHHHHHHHHHHH
LIDHVPAMDYADRNAAKRFIALIDTLYDNAVKLMASAAAEPADLYSASEGVEAMEFNRTV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
SRLIEMGSESYLALPHGRSDSLASGATTGLVET
HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPPLSFRQHYQSLVASGAIEADPAQARAVEAFGALDDTLANYKPPKKQGFLGRLFGGGE
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
PDKPPRGLYVHGEVGRGKTMLMDLFFDACPVPHKRRAHFHEFMAEAHERINAFRQNIKRG
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
EIPDGDVIGLTAASIFEEAWLLCFDEFHVTDIADAMILSRLFGKLFELGTVVVATSNVAP
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC
DDLYKGGLNRALFVPFIGQVKQHMEVLRLDARTDYRLEKFAGMKVWLAPDDAEATAALDR
HHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCHHHHHHHH
AWSRITGGAAGKPRDIAIKGRHLHVPKSDHHVARFDFADLCEKPLGASDYLRLAHEYHTL
HHHHHCCCCCCCCCEEEEECCEEECCCCCCCEEECCHHHHHCCCCCHHHHHHHHHHHHHH
LIDHVPAMDYADRNAAKRFIALIDTLYDNAVKLMASAAAEPADLYSASEGVEAMEFNRTV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
SRLIEMGSESYLALPHGRSDSLASGATTGLVET
HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]