Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is iscS [H]

Identifier: 86609108

GI number: 86609108

Start: 1719941

End: 1721137

Strand: Reverse

Name: iscS [H]

Synonym: CYB_1648

Alternate gene names: 86609108

Gene position: 1721137-1719941 (Counterclockwise)

Preceding gene: 86609109

Following gene: 86609107

Centisome position: 56.49

GC content: 64.91

Gene sequence:

>1197_bases
TTGGATCCTGCCCTCTACTTTGACCACAGCGCCACCACTCCGCCTCGGCCTGAGGTGATCGAGGCCATGCAGATGGCGAT
GCAGGAAAGCTGGGGCAACCCCTCCAGCTTGCACGGGTGGGGAGAACGGGCCGCCATGGCCATGGAGCGGGCGCGGCAGC
AGGTGGCCGAGCTGCTTAACTGTGAGCCGGAGGCGCTGCTGTTTACCTCAGGCGGGACGGAGTCCAACAACCTGGCCCTG
TTTGGGGTGGCCCAGCGCTACTCTACTCCCCAACATCTCATCATCTCCAGCGTCGAGCACGCCTCGGTGGAGAATGCTGC
CCGCCAGTTGCAGTCCCAAGGCTGGCAGGTCACCCGTCTGCTGGTGAACGCCGCCGGCCAGGTGGATCCCCAGACTTTGA
TCCAGGCGCTGCAACCCAATACCGTTTTGGTCTCCATCGTCCACGGCCAAAATGAGGTGGGATCCCTGCAGCCCATTGCA
GAGCTGGGTCAGATCTGTCGCCAGGCGGGGGTGCTCTTCCACACCGACGCTGTGCAGACGGTGGGGCGGATCCCGCTGGA
TCTGGCGCAACTGCCGGTGGATCTGCTCTCCCTTTCCGGGCATAAACTCTACGGGCCCCAGGGGGTGGGGGCGCTGTACG
TGCGCCCAGGGGTGGAGCTGCGACCGCTGCTGCGGGGGGGCGGGCAAGAACGGCGGCTGCGGGCTGGCACCCAAGGGATC
CCGGGCATTGTCGGCTTGGGAGTGGCGGCAGCTTTGGCGGCCCAAGAGCTATCTCAAGAAACGGCCCGCCTGCGGCAATT
GCAACGGCATTTGGCCCAGTTGCTAGCGGAGGTGCCCGGTTTGCGGCTGACCGGCCCCGTCCGTTTGGAGCAGCGCTTGC
CCCACCACCTCAGCTACTGCGCCGCAGGGATCCCGGGGAATGTGCTGGTCAGGGCCCTAAGCCGCCAGGGGATCGCCATT
AGCGCCGGCTCCGCCTGTAGCAGTGGCCAACTGATCCCCAGCCGCATCCTCTTGGCCATGGGCCACTCAGAAGCCGAGGC
GCTGGGATCCATTCGCCTTAGCCTTGGCAAAGCCACCACCTACGCTGCGGTTGAGTATGTGGCCCGATGTCTACAAACGG
AGCTTGCCTCCATCTCCAAATCCGTAGCCTTGGGGAATGCGGCAACTCAATCCCCGTTGTCGATCCCCGTCACGTAG

Upstream 100 bases:

>100_bases
GCCTCAACAAGGGGAAGCTGCTGCCAGCGTTGGGCAACACTGGCCAAGGATCTTAAGATAGGAACACGGAGCCCCGGCTG
GTCGAGCTGGCATGTTGCGT

Downstream 100 bases:

>100_bases
CCGGATCGAAGGTCGGGCAGGCTGGGTTAAGGTGATAAAGAGTTACAGGGCTGGTCGCTATGGCTGAGATGAGTCCGTAT
CAGGTGTTGGGAATTAGCGA

Product: aminotransferase, class V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL
FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA
ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI
PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI
SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT

Sequences:

>Translated_398_residues
MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL
FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA
ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI
PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI
SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT
>Mature_398_residues
MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL
FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA
ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI
PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI
SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT

Specific function: Catalyzes the removal of elemental sulfur from cysteine to produce alanine [H]

COG id: COG1104

COG function: function code E; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=378, Percent_Identity=44.7089947089947, Blast_Score=306, Evalue=3e-83,
Organism=Homo sapiens, GI156713448, Length=415, Percent_Identity=36.3855421686747, Blast_Score=218, Evalue=7e-57,
Organism=Escherichia coli, GI48994898, Length=384, Percent_Identity=41.40625, Blast_Score=297, Evalue=7e-82,
Organism=Escherichia coli, GI1789175, Length=400, Percent_Identity=29, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787970, Length=355, Percent_Identity=27.887323943662, Blast_Score=102, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI25143064, Length=375, Percent_Identity=41.0666666666667, Blast_Score=281, Evalue=3e-76,
Organism=Caenorhabditis elegans, GI17533177, Length=322, Percent_Identity=34.1614906832298, Blast_Score=157, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6319831, Length=371, Percent_Identity=41.7789757412399, Blast_Score=293, Evalue=2e-80,
Organism=Drosophila melanogaster, GI20129463, Length=374, Percent_Identity=43.3155080213904, Blast_Score=288, Evalue=6e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010240
- InterPro:   IPR017772
- InterPro:   IPR016454
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42208; Mature: 42208

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLN
CCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
CEPEALLFTSGGTESNNLALFGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRL
CCCCEEEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIAELGQICRQAGVLFHTDAVQT
HHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECHHHHH
VGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI
HHCCCHHHHHCCHHHHHCCCCEEECCCCCCEEEECCCCCCHHHHHCCCHHHHHHCCCCCC
PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHH
AAGIPGNVLVRALSRQGIAISAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATT
HCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHH
YAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLN
CCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
CEPEALLFTSGGTESNNLALFGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRL
CCCCEEEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIAELGQICRQAGVLFHTDAVQT
HHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECHHHHH
VGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI
HHCCCHHHHHCCHHHHHCCCCEEECCCCCCEEEECCCCCCHHHHHCCCHHHHHHCCCCCC
PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHH
AAGIPGNVLVRALSRQGIAISAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATT
HCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHH
YAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA