Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is iscS [H]
Identifier: 86609108
GI number: 86609108
Start: 1719941
End: 1721137
Strand: Reverse
Name: iscS [H]
Synonym: CYB_1648
Alternate gene names: 86609108
Gene position: 1721137-1719941 (Counterclockwise)
Preceding gene: 86609109
Following gene: 86609107
Centisome position: 56.49
GC content: 64.91
Gene sequence:
>1197_bases TTGGATCCTGCCCTCTACTTTGACCACAGCGCCACCACTCCGCCTCGGCCTGAGGTGATCGAGGCCATGCAGATGGCGAT GCAGGAAAGCTGGGGCAACCCCTCCAGCTTGCACGGGTGGGGAGAACGGGCCGCCATGGCCATGGAGCGGGCGCGGCAGC AGGTGGCCGAGCTGCTTAACTGTGAGCCGGAGGCGCTGCTGTTTACCTCAGGCGGGACGGAGTCCAACAACCTGGCCCTG TTTGGGGTGGCCCAGCGCTACTCTACTCCCCAACATCTCATCATCTCCAGCGTCGAGCACGCCTCGGTGGAGAATGCTGC CCGCCAGTTGCAGTCCCAAGGCTGGCAGGTCACCCGTCTGCTGGTGAACGCCGCCGGCCAGGTGGATCCCCAGACTTTGA TCCAGGCGCTGCAACCCAATACCGTTTTGGTCTCCATCGTCCACGGCCAAAATGAGGTGGGATCCCTGCAGCCCATTGCA GAGCTGGGTCAGATCTGTCGCCAGGCGGGGGTGCTCTTCCACACCGACGCTGTGCAGACGGTGGGGCGGATCCCGCTGGA TCTGGCGCAACTGCCGGTGGATCTGCTCTCCCTTTCCGGGCATAAACTCTACGGGCCCCAGGGGGTGGGGGCGCTGTACG TGCGCCCAGGGGTGGAGCTGCGACCGCTGCTGCGGGGGGGCGGGCAAGAACGGCGGCTGCGGGCTGGCACCCAAGGGATC CCGGGCATTGTCGGCTTGGGAGTGGCGGCAGCTTTGGCGGCCCAAGAGCTATCTCAAGAAACGGCCCGCCTGCGGCAATT GCAACGGCATTTGGCCCAGTTGCTAGCGGAGGTGCCCGGTTTGCGGCTGACCGGCCCCGTCCGTTTGGAGCAGCGCTTGC CCCACCACCTCAGCTACTGCGCCGCAGGGATCCCGGGGAATGTGCTGGTCAGGGCCCTAAGCCGCCAGGGGATCGCCATT AGCGCCGGCTCCGCCTGTAGCAGTGGCCAACTGATCCCCAGCCGCATCCTCTTGGCCATGGGCCACTCAGAAGCCGAGGC GCTGGGATCCATTCGCCTTAGCCTTGGCAAAGCCACCACCTACGCTGCGGTTGAGTATGTGGCCCGATGTCTACAAACGG AGCTTGCCTCCATCTCCAAATCCGTAGCCTTGGGGAATGCGGCAACTCAATCCCCGTTGTCGATCCCCGTCACGTAG
Upstream 100 bases:
>100_bases GCCTCAACAAGGGGAAGCTGCTGCCAGCGTTGGGCAACACTGGCCAAGGATCTTAAGATAGGAACACGGAGCCCCGGCTG GTCGAGCTGGCATGTTGCGT
Downstream 100 bases:
>100_bases CCGGATCGAAGGTCGGGCAGGCTGGGTTAAGGTGATAAAGAGTTACAGGGCTGGTCGCTATGGCTGAGATGAGTCCGTAT CAGGTGTTGGGAATTAGCGA
Product: aminotransferase, class V
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT
Sequences:
>Translated_398_residues MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT >Mature_398_residues MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLNCEPEALLFTSGGTESNNLAL FGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRLLVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIA ELGQICRQAGVLFHTDAVQTVGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYCAAGIPGNVLVRALSRQGIAI SAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATTYAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT
Specific function: Catalyzes the removal of elemental sulfur from cysteine to produce alanine [H]
COG id: COG1104
COG function: function code E; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily [H]
Homologues:
Organism=Homo sapiens, GI32307132, Length=378, Percent_Identity=44.7089947089947, Blast_Score=306, Evalue=3e-83, Organism=Homo sapiens, GI156713448, Length=415, Percent_Identity=36.3855421686747, Blast_Score=218, Evalue=7e-57, Organism=Escherichia coli, GI48994898, Length=384, Percent_Identity=41.40625, Blast_Score=297, Evalue=7e-82, Organism=Escherichia coli, GI1789175, Length=400, Percent_Identity=29, Blast_Score=118, Evalue=6e-28, Organism=Escherichia coli, GI1787970, Length=355, Percent_Identity=27.887323943662, Blast_Score=102, Evalue=4e-23, Organism=Caenorhabditis elegans, GI25143064, Length=375, Percent_Identity=41.0666666666667, Blast_Score=281, Evalue=3e-76, Organism=Caenorhabditis elegans, GI17533177, Length=322, Percent_Identity=34.1614906832298, Blast_Score=157, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6319831, Length=371, Percent_Identity=41.7789757412399, Blast_Score=293, Evalue=2e-80, Organism=Drosophila melanogaster, GI20129463, Length=374, Percent_Identity=43.3155080213904, Blast_Score=288, Evalue=6e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR010240 - InterPro: IPR017772 - InterPro: IPR016454 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: =2.8.1.7 [H]
Molecular weight: Translated: 42208; Mature: 42208
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLN CCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC CEPEALLFTSGGTESNNLALFGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRL CCCCEEEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIAELGQICRQAGVLFHTDAVQT HHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECHHHHH VGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI HHCCCHHHHHCCHHHHHCCCCEEECCCCCCEEEECCCCCCHHHHHCCCHHHHHHCCCCCC PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHH AAGIPGNVLVRALSRQGIAISAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATT HCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHH YAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MDPALYFDHSATTPPRPEVIEAMQMAMQESWGNPSSLHGWGERAAMAMERARQQVAELLN CCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC CEPEALLFTSGGTESNNLALFGVAQRYSTPQHLIISSVEHASVENAARQLQSQGWQVTRL CCCCEEEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVNAAGQVDPQTLIQALQPNTVLVSIVHGQNEVGSLQPIAELGQICRQAGVLFHTDAVQT HHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECHHHHH VGRIPLDLAQLPVDLLSLSGHKLYGPQGVGALYVRPGVELRPLLRGGGQERRLRAGTQGI HHCCCHHHHHCCHHHHHCCCCEEECCCCCCEEEECCCCCCHHHHHCCCHHHHHHCCCCCC PGIVGLGVAAALAAQELSQETARLRQLQRHLAQLLAEVPGLRLTGPVRLEQRLPHHLSYC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHH AAGIPGNVLVRALSRQGIAISAGSACSSGQLIPSRILLAMGHSEAEALGSIRLSLGKATT HCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHH YAAVEYVARCLQTELASISKSVALGNAATQSPLSIPVT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA