Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608903
Identifier: 86608903
GI number: 86608903
Start: 1504815
End: 1506077
Strand: Direct
Name: 86608903
Synonym: CYB_1436
Alternate gene names: NA
Gene position: 1504815-1506077 (Clockwise)
Preceding gene: 86608897
Following gene: 86608906
Centisome position: 49.39
GC content: 51.46
Gene sequence:
>1263_bases ATGTCTCAGAAAAGCCCATCCTTCTTAGAGAAACTGACTGACCTAACCCGCCAAATTGTTGACCGTGCCCGAGGGATCCC AGAAGCTTCTGAATCTCTCGAGAAGCCAGAAGCCTTTAAGTCTTTCTGGAATTCGGTGTCTCAGATACTACAGAAGGACC TCCTAGAGGCGCAGACAGAGTTGGGCCACTGCAACATCCTGGTCATTGGCAAAAGCGGGGTGGGCAAGAGCACCTTGGTC AATGCAGTGTTTAGAGATGAGCTGGCCCGTACCGGTGTTGGCAGCCCCGTCACCCGCCACATTCGTCAGTATTCCAAGCC AGGTTGCCCAATCACCATCTACGATACACCTGGCATGGAACTAGACGGTGAACAGAATCAGCAAGTTCGCCTGGAGGTTT CCCAGCTTATCGAGGAGCTGCGCTTTAAGGATCCTGAACATCACATCCATCTTGTTTGGTACTGCCTCCACCACGAACTG AAGCGGTTGGAGGAAGTTGAACGCAAATGGCTAAAGGAGTTGGAACTCAAAGACGTTCCCGTCATCTTGGTCTTAACCCA ATGCTTGGAATATCCCAATCCTGAAGAGAGCGAGTTTTTCCGGTATTTGCAGCATCAAAATTTGCCTGTCCGCTACATTG TTCCCGTTTTGGCCCGCAACAAGGCGATTAACCGGCAAATTACCATTCCTGCCCACGGGCTGGAGCACCTAATTGGCTGC ACGCTAGAGCTTTTGCCGGAAGTGGCTCGCCTTGCCTTTATCCGCCAGCAATTGCTGCGGGTGGATCTCAAAGCCGAGGC TGCCTTTAAGTACGTATCAGGCTATGTGGCCAGTGCAGCGTTTATCGGGGCAGTGCCCCTTCCCTTTGCAGATGCCCCTC TGTTGGTTACAGCCCAAGCAGGCATGATTGCCAATATCAGCTTTATTTTTGGCTTCGAGGCTTCCCCTTCTTTTTACTAC TCTTTGATAGCCGCTTTGGCAGGCACTACAATTACAACAGCAATCGGGCGAACGATTGTGTCCAACTTGCTGAAGATGAT TCCCGGCCCGGGGATTGTAGGCAGCGCTATCCAATCCACTACGGCAGCCACCCTCACTCTCTCTCTGGGCCTGGCCTATA TCGAGCTGATGAAGGCCATCGCCCGCGCCAAAATCCAAGGGATCCAGCTATCTCCAGAAGAGATGAAAGATATCTTTACA CGCGAGTACCAAAGTTATGTTGCCTCGGGATCCAAAACTCTGAAAGATGACTTTTCATCCTAG
Upstream 100 bases:
>100_bases TTGGCTAGGTCAGTCTCCGGTATCGGAAGAAACTTGGCAGTAGGATCCGCCCTGAACTACCTTTGTGGGGCTATCGGCCT TAGGGGAAGAAGCAAGAAGC
Downstream 100 bases:
>100_bases CTTTTGCGTAGGTACTGAATCTAGGGCAGGGGAAGGTCGTGGGGTCTCAAACCCAAAGGTGCCATCGACCAGGTAGAGGG GGCGGCCTTTCACTTCTTCA
Product: GTP-binding protein
Products: NA
Alternate protein names: Protein/Domain Associated With GTPase-Like Protein; GTPase; GTPase Family
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MSQKSPSFLEKLTDLTRQIVDRARGIPEASESLEKPEAFKSFWNSVSQILQKDLLEAQTELGHCNILVIGKSGVGKSTLV NAVFRDELARTGVGSPVTRHIRQYSKPGCPITIYDTPGMELDGEQNQQVRLEVSQLIEELRFKDPEHHIHLVWYCLHHEL KRLEEVERKWLKELELKDVPVILVLTQCLEYPNPEESEFFRYLQHQNLPVRYIVPVLARNKAINRQITIPAHGLEHLIGC TLELLPEVARLAFIRQQLLRVDLKAEAAFKYVSGYVASAAFIGAVPLPFADAPLLVTAQAGMIANISFIFGFEASPSFYY SLIAALAGTTITTAIGRTIVSNLLKMIPGPGIVGSAIQSTTAATLTLSLGLAYIELMKAIARAKIQGIQLSPEEMKDIFT REYQSYVASGSKTLKDDFSS
Sequences:
>Translated_420_residues MSQKSPSFLEKLTDLTRQIVDRARGIPEASESLEKPEAFKSFWNSVSQILQKDLLEAQTELGHCNILVIGKSGVGKSTLV NAVFRDELARTGVGSPVTRHIRQYSKPGCPITIYDTPGMELDGEQNQQVRLEVSQLIEELRFKDPEHHIHLVWYCLHHEL KRLEEVERKWLKELELKDVPVILVLTQCLEYPNPEESEFFRYLQHQNLPVRYIVPVLARNKAINRQITIPAHGLEHLIGC TLELLPEVARLAFIRQQLLRVDLKAEAAFKYVSGYVASAAFIGAVPLPFADAPLLVTAQAGMIANISFIFGFEASPSFYY SLIAALAGTTITTAIGRTIVSNLLKMIPGPGIVGSAIQSTTAATLTLSLGLAYIELMKAIARAKIQGIQLSPEEMKDIFT REYQSYVASGSKTLKDDFSS >Mature_419_residues SQKSPSFLEKLTDLTRQIVDRARGIPEASESLEKPEAFKSFWNSVSQILQKDLLEAQTELGHCNILVIGKSGVGKSTLVN AVFRDELARTGVGSPVTRHIRQYSKPGCPITIYDTPGMELDGEQNQQVRLEVSQLIEELRFKDPEHHIHLVWYCLHHELK RLEEVERKWLKELELKDVPVILVLTQCLEYPNPEESEFFRYLQHQNLPVRYIVPVLARNKAINRQITIPAHGLEHLIGCT LELLPEVARLAFIRQQLLRVDLKAEAAFKYVSGYVASAAFIGAVPLPFADAPLLVTAQAGMIANISFIFGFEASPSFYYS LIAALAGTTITTAIGRTIVSNLLKMIPGPGIVGSAIQSTTAATLTLSLGLAYIELMKAIARAKIQGIQLSPEEMKDIFTR EYQSYVASGSKTLKDDFSS
Specific function: Unknown
COG id: COG3596
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46748; Mature: 46616
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKSPSFLEKLTDLTRQIVDRARGIPEASESLEKPEAFKSFWNSVSQILQKDLLEAQTE CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LGHCNILVIGKSGVGKSTLVNAVFRDELARTGVGSPVTRHIRQYSKPGCPITIYDTPGME CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCC LDGEQNQQVRLEVSQLIEELRFKDPEHHIHLVWYCLHHELKRLEEVERKWLKELELKDVP CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VILVLTQCLEYPNPEESEFFRYLQHQNLPVRYIVPVLARNKAINRQITIPAHGLEHLIGC HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCEEECCHHHHHHHHHH TLELLPEVARLAFIRQQLLRVDLKAEAAFKYVSGYVASAAFIGAVPLPFADAPLLVTAQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC GMIANISFIFGFEASPSFYYSLIAALAGTTITTAIGRTIVSNLLKMIPGPGIVGSAIQST CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH TAATLTLSLGLAYIELMKAIARAKIQGIQLSPEEMKDIFTREYQSYVASGSKTLKDDFSS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCC >Mature Secondary Structure SQKSPSFLEKLTDLTRQIVDRARGIPEASESLEKPEAFKSFWNSVSQILQKDLLEAQTE CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LGHCNILVIGKSGVGKSTLVNAVFRDELARTGVGSPVTRHIRQYSKPGCPITIYDTPGME CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCC LDGEQNQQVRLEVSQLIEELRFKDPEHHIHLVWYCLHHELKRLEEVERKWLKELELKDVP CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC VILVLTQCLEYPNPEESEFFRYLQHQNLPVRYIVPVLARNKAINRQITIPAHGLEHLIGC HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCEEECCHHHHHHHHHH TLELLPEVARLAFIRQQLLRVDLKAEAAFKYVSGYVASAAFIGAVPLPFADAPLLVTAQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC GMIANISFIFGFEASPSFYYSLIAALAGTTITTAIGRTIVSNLLKMIPGPGIVGSAIQST CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH TAATLTLSLGLAYIELMKAIARAKIQGIQLSPEEMKDIFTREYQSYVASGSKTLKDDFSS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA