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The map label for this gene is apcA [H]

Identifier: 86608906

GI number: 86608906

Start: 1508399

End: 1508884

Strand: Direct

Name: apcA [H]

Synonym: CYB_1438

Alternate gene names: 86608906

Gene position: 1508399-1508884 (Clockwise)

Preceding gene: 86608903

Following gene: 86608907

Centisome position: 49.51

GC content: 58.44

Gene sequence:

>486_bases
ATGAGTGTTGTTACGAAATCGATTGTGAACGCGGACGCGGAGGCCCGCTACCTCAGCCCGGGGGAACTGGATCGGATCAA
GTCCTTTGTCACCTCGGGCGAGAAGCGGTTGCGCATTGCTCAAGTCTTAACCGAGTCTCGTGAGCGCATCGTCAAACAAG
CTGCCGACCAACTCTTCCAGAAGCGCCCCGACATTGTCTCTCCGGGGGGCAATGCCTACGGGGAAGAGATGACGGCGACT
TGCCTGCGCGATATGGACTACTACCTGCGCCTGATCACTTACGGCATCATTGCCGGCGATGTCACCCCGATTGAAGAGAT
CGGCCTGGTGGGTGTCCGCGAGATGTACAACTCCCTGGGCACACCCATTCCGGCGGTGGCCGAGAGCATTCGTCAAATGA
AGCAGGTGGCCATGGGTCTGCTCTCTCCTGACGATGCGGCTGAAGCCGGCTACTACTTCGACTTTGTGGTGGGGGCAATG
AGCTAA

Upstream 100 bases:

>100_bases
AGTGTGAAGATCTGAGATGGCAGACGGCAAGCATATCGGAAAATAACTTGCGGGTATGCTCGTCATACTCTTTAAAAAAT
CGACTTGAGGATGGATATCC

Downstream 100 bases:

>100_bases
TCCCTCATTGTTTTTGCCGCACAACCCTTTGCTGTTCGTCGATTTGGATTTAGGAAGCTCATCATGCAAGACGCAATTAC
TGCTGTAATCAACAGCTACG

Product: allophycocyanin, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSVVTKSIVNADAEARYLSPGELDRIKSFVTSGEKRLRIAQVLTESRERIVKQAADQLFQKRPDIVSPGGNAYGEEMTAT
CLRDMDYYLRLITYGIIAGDVTPIEEIGLVGVREMYNSLGTPIPAVAESIRQMKQVAMGLLSPDDAAEAGYYFDFVVGAM
S

Sequences:

>Translated_161_residues
MSVVTKSIVNADAEARYLSPGELDRIKSFVTSGEKRLRIAQVLTESRERIVKQAADQLFQKRPDIVSPGGNAYGEEMTAT
CLRDMDYYLRLITYGIIAGDVTPIEEIGLVGVREMYNSLGTPIPAVAESIRQMKQVAMGLLSPDDAAEAGYYFDFVVGAM
S
>Mature_160_residues
SVVTKSIVNADAEARYLSPGELDRIKSFVTSGEKRLRIAQVLTESRERIVKQAADQLFQKRPDIVSPGGNAYGEEMTATC
LRDMDYYLRLITYGIIAGDVTPIEEIGLVGVREMYNSLGTPIPAVAESIRQMKQVAMGLLSPDDAAEAGYYFDFVVGAMS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17661; Mature: 17530

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVTKSIVNADAEARYLSPGELDRIKSFVTSGEKRLRIAQVLTESRERIVKQAADQLFQ
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDIVSPGGNAYGEEMTATCLRDMDYYLRLITYGIIAGDVTPIEEIGLVGVREMYNSLG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
TPIPAVAESIRQMKQVAMGLLSPDDAAEAGYYFDFVVGAMS
CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SVVTKSIVNADAEARYLSPGELDRIKSFVTSGEKRLRIAQVLTESRERIVKQAADQLFQ
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDIVSPGGNAYGEEMTATCLRDMDYYLRLITYGIIAGDVTPIEEIGLVGVREMYNSLG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
TPIPAVAESIRQMKQVAMGLLSPDDAAEAGYYFDFVVGAMS
CCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]