Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608785
Identifier: 86608785
GI number: 86608785
Start: 1373768
End: 1375492
Strand: Direct
Name: 86608785
Synonym: CYB_1310
Alternate gene names: NA
Gene position: 1373768-1375492 (Clockwise)
Preceding gene: 86608784
Following gene: 86608786
Centisome position: 45.09
GC content: 61.04
Gene sequence:
>1725_bases ATGGATACGACTGACCTCAGCGCCGTTGCCGACCGAACGTTACGGCTGCGTTCTGACCGGCAAACCTTCGATCAACGGGC GGAAGTCTTCCAAGCAGAAGGCAATGTGGAGATGCGGCTGGGCCGCTCTGTGTTGCGGGCGGATCGCCTGCGCATTGAAC TGCGACAGCGGCGGGCTGTGGCCGAGGGCAATGTTTCTATTCAACTGGATCGGCAGCGCATTCAGGGATCCCGGCTGGAG TACGACTTTGAGCAAGAGCGGGGATTTTTGGAAGAGGCCTTCGGGCAGGTGGATATTGGCCAGTTGCAGGCCAGTGGATC CCCGGCAGCCGCCCTCTCTCCGCAGCGGCTGGTGCGCTTTCGTGCCGTTCGCATCCGCTTCGATGCCACCACCTGGGAAG GAGAACAGGTGCGGCTGACCAACGACCCGCTGGATCCGCCGGAGTTGGAGATTCGTAGCCCACGGGTGACCTCCACTCTT CAGGCAGATGGTTCCAGCCTGCTGATTGCCGAGGCCGGCCAACTGGCCTTCGACCAGGTCTTGTTTCTGCCTCTGCCCAT TCGGTTGCGCTTCGACTCATTAAACCGTCAGCCTCCGGTCAGCATCTTCTACGACGATTTCGACCGAGAAGAATTGCGAC GGGGCCTGATCCTGCAACCCAACTTCGAGCTGCTGCGGGATCCCAACGTGAGCTTGGTGCTCTCCCCGCAACTGTATCCA CAACGTCTTTGGGGCAGTGAGCAGGGCCTTTTGGATGGGATCGGGCTGCGGGCCGATTTTCGTTGGCGGCAACCGGAAGC CAACGCTCAAACCTCGCTGTTTGCCGAGCTGCGGGGGATCGTCTTCCAGGAGTTTGCTCAGCGCTTGCGAGCCCAGGTCG AACACCGCATCACCACCGGCGATGGCGGAGAAGTCGCCTACACCTACGCCTATCGGGAACGCTTCTTCAGCGGTCGCCTG GGGTTTCAAATTGTGGAAAACCGCCTCGGTGCCAGCTACCGCTCACCCACCCTCCGCCTGGGCAATACCGGCTTGGATCT CAGCTACCGCATAGCCGCCGACTACATTGATGCCTTGGGGCAGCCGGATGAAATCGACACGGATCCGGAGTTGGCCTTAG CCAACACCACCGACCGCATTCAGCTCTCCCGCCTGCAACTGGGGGCAACCTTGAATCGCTCCTTTCCCCTCTGGAGCCCT CCCAAGACGGCGGCGGATCCCCCACCCCGCTTTTCCGCTCTGCCCATCGAGCAAGGGATCTGGCTCAGCACCGGTGTGAG CAGCAGCCAGTCTTTTTACTCTAATGGCCGAGCCCAGAGCTATACTGCCGGCAGTATTGGCATTGATGCGGTGATTGGGG CTTTTGTGGCCGATACCTTCGACTACACCAACCTGAGGGTGACCTACTCCAACGGTTTTCTGGCCGGAGCCTCGCCATTT TTGTTTGACCGCATCACCACGCGGGAACAGCTCGTCCTGGGCTTTTTGCAACAACTGTACGGCCCGCTGCGGGTAGGGGC AGAGACAACGGTAGATTTGCAGTCGGGCCAGCAGGTGGATGTCGTCTATCGCCTGGGCTACGACCGCCGCACCTATGGCT TTAGCCTGCAGTACAATCCGGTGCGCCAGTCGGGGGCTCTGGAGCTGCGGGTGGAGGGCCTGAACTGGGATCCCGGCCAA TCCTCGCCGCAGCCGACGACCGGATCGAGGATCCAAGAGCCCTGA
Upstream 100 bases:
>100_bases GTTGCGGTTGCTCTGGCTCTGCTTGGGGGTGCTGGGGTTGGCAGTTGCCGGCCCTACTGCGGCTCAGGTGGAGTCCCAGA AGAAGGGGGGCGCTCAGCCC
Downstream 100 bases:
>100_bases TCCCCAAACTCCAAGGGAACGGAAAAATGTAATCCTGACTACTACTCTGTGGAGATTTTCTATGAGAAATTGTCCCATAT TGGGGAAAAATCCTAATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 574; Mature: 574
Protein sequence:
>574_residues MDTTDLSAVADRTLRLRSDRQTFDQRAEVFQAEGNVEMRLGRSVLRADRLRIELRQRRAVAEGNVSIQLDRQRIQGSRLE YDFEQERGFLEEAFGQVDIGQLQASGSPAAALSPQRLVRFRAVRIRFDATTWEGEQVRLTNDPLDPPELEIRSPRVTSTL QADGSSLLIAEAGQLAFDQVLFLPLPIRLRFDSLNRQPPVSIFYDDFDREELRRGLILQPNFELLRDPNVSLVLSPQLYP QRLWGSEQGLLDGIGLRADFRWRQPEANAQTSLFAELRGIVFQEFAQRLRAQVEHRITTGDGGEVAYTYAYRERFFSGRL GFQIVENRLGASYRSPTLRLGNTGLDLSYRIAADYIDALGQPDEIDTDPELALANTTDRIQLSRLQLGATLNRSFPLWSP PKTAADPPPRFSALPIEQGIWLSTGVSSSQSFYSNGRAQSYTAGSIGIDAVIGAFVADTFDYTNLRVTYSNGFLAGASPF LFDRITTREQLVLGFLQQLYGPLRVGAETTVDLQSGQQVDVVYRLGYDRRTYGFSLQYNPVRQSGALELRVEGLNWDPGQ SSPQPTTGSRIQEP
Sequences:
>Translated_574_residues MDTTDLSAVADRTLRLRSDRQTFDQRAEVFQAEGNVEMRLGRSVLRADRLRIELRQRRAVAEGNVSIQLDRQRIQGSRLE YDFEQERGFLEEAFGQVDIGQLQASGSPAAALSPQRLVRFRAVRIRFDATTWEGEQVRLTNDPLDPPELEIRSPRVTSTL QADGSSLLIAEAGQLAFDQVLFLPLPIRLRFDSLNRQPPVSIFYDDFDREELRRGLILQPNFELLRDPNVSLVLSPQLYP QRLWGSEQGLLDGIGLRADFRWRQPEANAQTSLFAELRGIVFQEFAQRLRAQVEHRITTGDGGEVAYTYAYRERFFSGRL GFQIVENRLGASYRSPTLRLGNTGLDLSYRIAADYIDALGQPDEIDTDPELALANTTDRIQLSRLQLGATLNRSFPLWSP PKTAADPPPRFSALPIEQGIWLSTGVSSSQSFYSNGRAQSYTAGSIGIDAVIGAFVADTFDYTNLRVTYSNGFLAGASPF LFDRITTREQLVLGFLQQLYGPLRVGAETTVDLQSGQQVDVVYRLGYDRRTYGFSLQYNPVRQSGALELRVEGLNWDPGQ SSPQPTTGSRIQEP >Mature_574_residues MDTTDLSAVADRTLRLRSDRQTFDQRAEVFQAEGNVEMRLGRSVLRADRLRIELRQRRAVAEGNVSIQLDRQRIQGSRLE YDFEQERGFLEEAFGQVDIGQLQASGSPAAALSPQRLVRFRAVRIRFDATTWEGEQVRLTNDPLDPPELEIRSPRVTSTL QADGSSLLIAEAGQLAFDQVLFLPLPIRLRFDSLNRQPPVSIFYDDFDREELRRGLILQPNFELLRDPNVSLVLSPQLYP QRLWGSEQGLLDGIGLRADFRWRQPEANAQTSLFAELRGIVFQEFAQRLRAQVEHRITTGDGGEVAYTYAYRERFFSGRL GFQIVENRLGASYRSPTLRLGNTGLDLSYRIAADYIDALGQPDEIDTDPELALANTTDRIQLSRLQLGATLNRSFPLWSP PKTAADPPPRFSALPIEQGIWLSTGVSSSQSFYSNGRAQSYTAGSIGIDAVIGAFVADTFDYTNLRVTYSNGFLAGASPF LFDRITTREQLVLGFLQQLYGPLRVGAETTVDLQSGQQVDVVYRLGYDRRTYGFSLQYNPVRQSGALELRVEGLNWDPGQ SSPQPTTGSRIQEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64516; Mature: 64516
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTTDLSAVADRTLRLRSDRQTFDQRAEVFQAEGNVEMRLGRSVLRADRLRIELRQRRAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHHH AEGNVSIQLDRQRIQGSRLEYDFEQERGFLEEAFGQVDIGQLQASGSPAAALSPQRLVRF HCCCEEEEEEHHHCCCCCCCCCHHHHCCHHHHHHCCCCHHHEECCCCCCCCCCHHHHHEE RAVRIRFDATTWEGEQVRLTNDPLDPPELEIRSPRVTSTLQADGSSLLIAEAGQLAFDQV EEEEEEEECCCCCCCEEEECCCCCCCCCCEECCCCCCEEEECCCCEEEEEECCCHHHHEE LFLPLPIRLRFDSLNRQPPVSIFYDDFDREELRRGLILQPNFELLRDPNVSLVLSPQLYP EEECCCEEEEECCCCCCCCEEEEECCCCHHHHHCCCEECCCHHHHCCCCCEEEECCCCCH QRLWGSEQGLLDGIGLRADFRWRQPEANAQTSLFAELRGIVFQEFAQRLRAQVEHRITTG HHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC DGGEVAYTYAYRERFFSGRLGFQIVENRLGASYRSPTLRLGNTGLDLSYRIAADYIDALG CCCCEEEEEHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEHHHHHHHHCC QPDEIDTDPELALANTTDRIQLSRLQLGATLNRSFPLWSPPKTAADPPPRFSALPIEQGI CCCCCCCCCCEEEECCCCCEEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE WLSTGVSSSQSFYSNGRAQSYTAGSIGIDAVIGAFVADTFDYTNLRVTYSNGFLAGASPF EEECCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEECCCCCH LFDRITTREQLVLGFLQQLYGPLRVGAETTVDLQSGQQVDVVYRLGYDRRTYGFSLQYNP HHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEEEEEECC VRQSGALELRVEGLNWDPGQSSPQPTTGSRIQEP CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDTTDLSAVADRTLRLRSDRQTFDQRAEVFQAEGNVEMRLGRSVLRADRLRIELRQRRAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHHHHHHH AEGNVSIQLDRQRIQGSRLEYDFEQERGFLEEAFGQVDIGQLQASGSPAAALSPQRLVRF HCCCEEEEEEHHHCCCCCCCCCHHHHCCHHHHHHCCCCHHHEECCCCCCCCCCHHHHHEE RAVRIRFDATTWEGEQVRLTNDPLDPPELEIRSPRVTSTLQADGSSLLIAEAGQLAFDQV EEEEEEEECCCCCCCEEEECCCCCCCCCCEECCCCCCEEEECCCCEEEEEECCCHHHHEE LFLPLPIRLRFDSLNRQPPVSIFYDDFDREELRRGLILQPNFELLRDPNVSLVLSPQLYP EEECCCEEEEECCCCCCCCEEEEECCCCHHHHHCCCEECCCHHHHCCCCCEEEECCCCCH QRLWGSEQGLLDGIGLRADFRWRQPEANAQTSLFAELRGIVFQEFAQRLRAQVEHRITTG HHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC DGGEVAYTYAYRERFFSGRLGFQIVENRLGASYRSPTLRLGNTGLDLSYRIAADYIDALG CCCCEEEEEHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEHHHHHHHHCC QPDEIDTDPELALANTTDRIQLSRLQLGATLNRSFPLWSPPKTAADPPPRFSALPIEQGI CCCCCCCCCCEEEECCCCCEEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE WLSTGVSSSQSFYSNGRAQSYTAGSIGIDAVIGAFVADTFDYTNLRVTYSNGFLAGASPF EEECCCCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEECCCCCH LFDRITTREQLVLGFLQQLYGPLRVGAETTVDLQSGQQVDVVYRLGYDRRTYGFSLQYNP HHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEEEEEECC VRQSGALELRVEGLNWDPGQSSPQPTTGSRIQEP CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA