| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608473
Identifier: 86608473
GI number: 86608473
Start: 1030047
End: 1031633
Strand: Reverse
Name: 86608473
Synonym: CYB_0994
Alternate gene names: NA
Gene position: 1031633-1030047 (Counterclockwise)
Preceding gene: 86608474
Following gene: 86608467
Centisome position: 33.86
GC content: 61.0
Gene sequence:
>1587_bases TTGCCTAGAGCGGTTTGGCTAATCCTGGGGTTGGGCTTGTTCATGCGGGGCCTGGTGGCTGCCCTTTTGCCGCCTGGCTT TGACGAAGCCTACTACTACCTCTACACCCGCCATCTGGATTGGAGCTATTTTGACCATCCGCCGCTGGTGGCCTGGACAA CAGGCTTGGGGCCTGCCTTGACCGGCCAGGTGTCGGCTTTTTCTATTCGACTGGGATCCCTGCTGCTCTATTCTGGCTCT TCCCTACTCCTTTACTACACCGGAGCACGCCTTTTCTCTGATCGGGCAGGACTGATCAGCTTGGCGGCCATCAGCATCGC ACCCATCCTTTGGATTGGGTTTGGGGTGCTGACCCTGCCGGATAGTCCGCTGGTCTTTTTTACGGCAGCAACCCTATGGG TGGCCAGCCAGGAGTTTTTCCCGGTGCCTTTGGGGCAGGGGAAATTGGGAGTCTATGGGGCGGCTCGCTATCGGCCAGGG CCTAGGCTAGCGCTCATAGGTCTCTTGGTGGGGCTGGCCTGTCTGGGGAAATACCACGGCTTGGCTTTGGGGTTCGGCCT GGTACTCTTTTGTCTGCTCAGCCCAGTTCATCGCTGTGCCTTGAGGTCGGGCTGGACGGTGCTGGCGGTGCTGGGTTTTG TGCTGGCCTTCAGCCCGGTGCTGATCTGGAACGCCCAGCAGGATTGGGTCTCCTTTCGCTTTCAGGGGGGGCGGGCGGTG CCGGAGGCAGGGTATCAACTGCAAGCGCTGGGGCTGACGATCCTTTCTGAAATCTTTTACCTGTTCCCCAGCTTGGGGAT CCCTTTGGGGTGGGCGAGTTTGGCAGGGACGGGTCGGGTGGCCCTGCAGATTCTCCGCGGGATGCGGCTGACGGATGAAG AGCTCAAGCACCTTTTGATCCTGGCCTGTGGATTACCGCTGGTGTTGGCCTTTACCTTGATGGGAGGCTACCGGCCCATC TTGCCCACCTGGCCCATGCCGGGGTTTTGGGTGCTGACGCTGCTGCTGGGATCCTTCTGGGAACGGTGGCCGGGAGCGAA GCGAACCTTAGTGGGGACGGCGGTGATGGTCAGCTTGGTGGTGGGGGTGGGGCTGGCCCATGTGCGCTATGGCCTGCTGC AGGCTCCTGGCGGGCTGGGCCTGTGGCCCGTGGAGCAGGATCCCTCTACTCAGCTCATTGAAATTGAGCAGTTGCGGCAG CGGTTTCGGACGGATCCCCACCTGGCTCAAGCCCTTGAGGAGGCAGAGTTCGTTTTTACCAATGTCTATTTTTTGGGCGG TCAGATCGCCATGGCCCTGGCTCCGCTGACGGACAAGCCTCTGACCTGCCTGGATGCGGATTTGCGGGGCTTTGCCTTTT GGTCGCAGCCGCAGGACTGGCTGGGGCAGGATGGGCTGCTCATCACTTCCAAGCTGTTCCAGCCGAGGGCAGGGATCCCA GCCACCTATGGCGACTACTTTGCCCAAATCGAGCCTGTGGCCGAGGTTCCCCTGGTGCGGGCAGGGGCGGTGGCGCAAAC CTTTCAGGTGTACCTGGCTCGACAGATGCGCAAGCCCTATCCCCGCCCTTATTCCCGCCTGCAATAA
Upstream 100 bases:
>100_bases TTTTTTGCGGGAAACAAAGTCATAGTGCTAGAGGGACGTAGCCCCGAGAGGTATTCAAGGTAAGTTAGATCTGTCCATCT GCCCATAGGGATCCCCTCCA
Downstream 100 bases:
>100_bases CAGCAGAGGACATCCTGGGCAAAGCTAGAGGGGGCGATGTCTGTCGAACCAGCGCATCAGCATTGCAGCCAAGCGTTCGG GGTTGTGGCGCACCAAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Transferase Family; Dolichyl-Phosphate-Mannose-Protein Mannosyltransferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Glycosyl Transferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Glycosyl/Arabinosyl/Mannosyl Transferase; Undecaprenyl-PhosphomannoseProtein Mannosyltransferase; Glycosyltransferase; Dolichol Monophosphate Mannose Synthase
Number of amino acids: Translated: 528; Mature: 527
Protein sequence:
>528_residues MPRAVWLILGLGLFMRGLVAALLPPGFDEAYYYLYTRHLDWSYFDHPPLVAWTTGLGPALTGQVSAFSIRLGSLLLYSGS SLLLYYTGARLFSDRAGLISLAAISIAPILWIGFGVLTLPDSPLVFFTAATLWVASQEFFPVPLGQGKLGVYGAARYRPG PRLALIGLLVGLACLGKYHGLALGFGLVLFCLLSPVHRCALRSGWTVLAVLGFVLAFSPVLIWNAQQDWVSFRFQGGRAV PEAGYQLQALGLTILSEIFYLFPSLGIPLGWASLAGTGRVALQILRGMRLTDEELKHLLILACGLPLVLAFTLMGGYRPI LPTWPMPGFWVLTLLLGSFWERWPGAKRTLVGTAVMVSLVVGVGLAHVRYGLLQAPGGLGLWPVEQDPSTQLIEIEQLRQ RFRTDPHLAQALEEAEFVFTNVYFLGGQIAMALAPLTDKPLTCLDADLRGFAFWSQPQDWLGQDGLLITSKLFQPRAGIP ATYGDYFAQIEPVAEVPLVRAGAVAQTFQVYLARQMRKPYPRPYSRLQ
Sequences:
>Translated_528_residues MPRAVWLILGLGLFMRGLVAALLPPGFDEAYYYLYTRHLDWSYFDHPPLVAWTTGLGPALTGQVSAFSIRLGSLLLYSGS SLLLYYTGARLFSDRAGLISLAAISIAPILWIGFGVLTLPDSPLVFFTAATLWVASQEFFPVPLGQGKLGVYGAARYRPG PRLALIGLLVGLACLGKYHGLALGFGLVLFCLLSPVHRCALRSGWTVLAVLGFVLAFSPVLIWNAQQDWVSFRFQGGRAV PEAGYQLQALGLTILSEIFYLFPSLGIPLGWASLAGTGRVALQILRGMRLTDEELKHLLILACGLPLVLAFTLMGGYRPI LPTWPMPGFWVLTLLLGSFWERWPGAKRTLVGTAVMVSLVVGVGLAHVRYGLLQAPGGLGLWPVEQDPSTQLIEIEQLRQ RFRTDPHLAQALEEAEFVFTNVYFLGGQIAMALAPLTDKPLTCLDADLRGFAFWSQPQDWLGQDGLLITSKLFQPRAGIP ATYGDYFAQIEPVAEVPLVRAGAVAQTFQVYLARQMRKPYPRPYSRLQ >Mature_527_residues PRAVWLILGLGLFMRGLVAALLPPGFDEAYYYLYTRHLDWSYFDHPPLVAWTTGLGPALTGQVSAFSIRLGSLLLYSGSS LLLYYTGARLFSDRAGLISLAAISIAPILWIGFGVLTLPDSPLVFFTAATLWVASQEFFPVPLGQGKLGVYGAARYRPGP RLALIGLLVGLACLGKYHGLALGFGLVLFCLLSPVHRCALRSGWTVLAVLGFVLAFSPVLIWNAQQDWVSFRFQGGRAVP EAGYQLQALGLTILSEIFYLFPSLGIPLGWASLAGTGRVALQILRGMRLTDEELKHLLILACGLPLVLAFTLMGGYRPIL PTWPMPGFWVLTLLLGSFWERWPGAKRTLVGTAVMVSLVVGVGLAHVRYGLLQAPGGLGLWPVEQDPSTQLIEIEQLRQR FRTDPHLAQALEEAEFVFTNVYFLGGQIAMALAPLTDKPLTCLDADLRGFAFWSQPQDWLGQDGLLITSKLFQPRAGIPA TYGDYFAQIEPVAEVPLVRAGAVAQTFQVYLARQMRKPYPRPYSRLQ
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57911; Mature: 57780
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRAVWLILGLGLFMRGLVAALLPPGFDEAYYYLYTRHLDWSYFDHPPLVAWTTGLGPAL CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCC TGQVSAFSIRLGSLLLYSGSSLLLYYTGARLFSDRAGLISLAAISIAPILWIGFGVLTLP CCCCEEEEEEHHEEEEECCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCEECC DSPLVFFTAATLWVASQEFFPVPLGQGKLGVYGAARYRPGPRLALIGLLVGLACLGKYHG CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH LALGFGLVLFCLLSPVHRCALRSGWTVLAVLGFVLAFSPVLIWNAQQDWVSFRFQGGRAV HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHEEEEECCCCCC PEAGYQLQALGLTILSEIFYLFPSLGIPLGWASLAGTGRVALQILRGMRLTDEELKHLLI CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH LACGLPLVLAFTLMGGYRPILPTWPMPGFWVLTLLLGSFWERWPGAKRTLVGTAVMVSLV HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VGVGLAHVRYGLLQAPGGLGLWPVEQDPSTQLIEIEQLRQRFRTDPHLAQALEEAEFVFT HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH NVYFLGGQIAMALAPLTDKPLTCLDADLRGFAFWSQPQDWLGQDGLLITSKLFQPRAGIP HHHHCCCCEEHHEECCCCCCCHHCCCCCCCEEECCCCHHHCCCCCEEEEHHHCCCCCCCC ATYGDYFAQIEPVAEVPLVRAGAVAQTFQVYLARQMRKPYPRPYSRLQ CCHHHHHHHCCCHHHCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHCC >Mature Secondary Structure PRAVWLILGLGLFMRGLVAALLPPGFDEAYYYLYTRHLDWSYFDHPPLVAWTTGLGPAL CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCC TGQVSAFSIRLGSLLLYSGSSLLLYYTGARLFSDRAGLISLAAISIAPILWIGFGVLTLP CCCCEEEEEEHHEEEEECCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCEECC DSPLVFFTAATLWVASQEFFPVPLGQGKLGVYGAARYRPGPRLALIGLLVGLACLGKYHG CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH LALGFGLVLFCLLSPVHRCALRSGWTVLAVLGFVLAFSPVLIWNAQQDWVSFRFQGGRAV HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHHEEEEECCCCCC PEAGYQLQALGLTILSEIFYLFPSLGIPLGWASLAGTGRVALQILRGMRLTDEELKHLLI CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH LACGLPLVLAFTLMGGYRPILPTWPMPGFWVLTLLLGSFWERWPGAKRTLVGTAVMVSLV HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VGVGLAHVRYGLLQAPGGLGLWPVEQDPSTQLIEIEQLRQRFRTDPHLAQALEEAEFVFT HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH NVYFLGGQIAMALAPLTDKPLTCLDADLRGFAFWSQPQDWLGQDGLLITSKLFQPRAGIP HHHHCCCCEEHHEECCCCCCCHHCCCCCCCEEECCCCHHHCCCCCEEEEHHHCCCCCCCC ATYGDYFAQIEPVAEVPLVRAGAVAQTFQVYLARQMRKPYPRPYSRLQ CCHHHHHHHCCCHHHCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA