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The map label for this gene is cpcE-1 [H]

Identifier: 86608422

GI number: 86608422

Start: 978721

End: 979473

Strand: Direct

Name: cpcE-1 [H]

Synonym: CYB_0942

Alternate gene names: 86608422

Gene position: 978721-979473 (Clockwise)

Preceding gene: 86608421

Following gene: 86608423

Centisome position: 32.12

GC content: 63.48

Gene sequence:

>753_bases
GTGCTGCCGCAGCAGCTCACTTGGGAGCAGGCGATAGCCCGGCTGCAGGGGGATGACTTGCAAGATCGGTACTATGCTGC
CTGGTACCTGGGCACAGTTCGGGATCCAAGGGGGGTAGAGCCGCTGCTTTTGGCGTTGCAGGATGAGCGGGATCGCACTG
CCTTGGGGGGCTATCCTCTGCGCCGCAATGCCGCTAAGGCCCTGGGGCAAATCGGGGATGCGCGGGCCGTGCCCGGTTTG
ATCGAGGCGCTCACTTGTACCGACTTTCATGTGCGGGAAGAGGCTGCCTATGCCTTGGCTCAATTGGGGGACAAGCGAGC
GGTGGATCCCTTGCTGGCACTGTTGCAGTCCCGCGAGCAGGAGCAGCCCTGGGAAGCCCTTATCGAGGCCTTGGGTCAGC
TTCAGGCCACCGAGGCTGAGGCAGCGATCCGGCCCTTTTTGAACCATCCCTCTGAGCGGGTGCGTTCGGCAGCGGCTTGG
GTGCTCTATCGCTTTACGCAAGCCGAGGAGCTGACCCAAATCCTGGTGGCGCTACTGGCCCACTCCAACTCCAGCCTACG
ACAGGCCGCTTTGTTCGACCTGGCCGAATCGGGATGGGTAGCGGGGGCGCCGCTGCTGGCCACAGCCGACGTGGCTCTCA
ACCTGCGCATCAATGCTCTGAAGCGGCTGTTCGATGTGGCGCTTCAGTTGGGGTGGGTGCCGCTGGCTCAGGTGACGGCG
GTGATCCTGCCGCAACTGGAGAAGCTCTTCTAG

Upstream 100 bases:

>100_bases
GCTGAGTGAGGGAGGCCCGACGGCCGACTGAAGTTACCGGCAAGGTTGCCCAGGTGTCATGAACAGCTCTGCAACGGTTC
GTATGGCATCCAACACGGCG

Downstream 100 bases:

>100_bases
GATCCTGGGGCGCTCAGTGCCTTTGATCAGCGGTTTCAAGTGTACCTTTGACTATTCGTTGCCTATGTCCTCCGCCTCGG
CTGCTCAAGCGTTTCCCATT

Product: phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcE [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MLPQQLTWEQAIARLQGDDLQDRYYAAWYLGTVRDPRGVEPLLLALQDERDRTALGGYPLRRNAAKALGQIGDARAVPGL
IEALTCTDFHVREEAAYALAQLGDKRAVDPLLALLQSREQEQPWEALIEALGQLQATEAEAAIRPFLNHPSERVRSAAAW
VLYRFTQAEELTQILVALLAHSNSSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGWVPLAQVTA
VILPQLEKLF

Sequences:

>Translated_250_residues
MLPQQLTWEQAIARLQGDDLQDRYYAAWYLGTVRDPRGVEPLLLALQDERDRTALGGYPLRRNAAKALGQIGDARAVPGL
IEALTCTDFHVREEAAYALAQLGDKRAVDPLLALLQSREQEQPWEALIEALGQLQATEAEAAIRPFLNHPSERVRSAAAW
VLYRFTQAEELTQILVALLAHSNSSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGWVPLAQVTA
VILPQLEKLF
>Mature_250_residues
MLPQQLTWEQAIARLQGDDLQDRYYAAWYLGTVRDPRGVEPLLLALQDERDRTALGGYPLRRNAAKALGQIGDARAVPGL
IEALTCTDFHVREEAAYALAQLGDKRAVDPLLALLQSREQEQPWEALIEALGQLQATEAEAAIRPFLNHPSERVRSAAAW
VLYRFTQAEELTQILVALLAHSNSSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGWVPLAQVTA
VILPQLEKLF

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 27605; Mature: 27605

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPQQLTWEQAIARLQGDDLQDRYYAAWYLGTVRDPRGVEPLLLALQDERDRTALGGYPL
CCCCCCCHHHHHHHHCCCCCCHHEEHHHEEECCCCCCCCCHHHHHHHCCCCCHHHCCCCC
RRNAAKALGQIGDARAVPGLIEALTCTDFHVREEAAYALAQLGDKRAVDPLLALLQSREQ
HHHHHHHHHHCCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
EQPWEALIEALGQLQATEAEAAIRPFLNHPSERVRSAAAWVLYRFTQAEELTQILVALLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSNSSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGWVPLAQVTA
CCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHH
VILPQLEKLF
HHHHHHHHHC
>Mature Secondary Structure
MLPQQLTWEQAIARLQGDDLQDRYYAAWYLGTVRDPRGVEPLLLALQDERDRTALGGYPL
CCCCCCCHHHHHHHHCCCCCCHHEEHHHEEECCCCCCCCCHHHHHHHCCCCCHHHCCCCC
RRNAAKALGQIGDARAVPGLIEALTCTDFHVREEAAYALAQLGDKRAVDPLLALLQSREQ
HHHHHHHHHHCCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
EQPWEALIEALGQLQATEAEAAIRPFLNHPSERVRSAAAWVLYRFTQAEELTQILVALLA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSNSSLRQAALFDLAESGWVAGAPLLATADVALNLRINALKRLFDVALQLGWVPLAQVTA
CCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHEEHHHHHHHHHHHHHHHHCCCCHHHHHH
VILPQLEKLF
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840 [H]