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The map label for this gene is cpcD [H]

Identifier: 86608421

GI number: 86608421

Start: 978360

End: 978629

Strand: Direct

Name: cpcD [H]

Synonym: CYB_0941

Alternate gene names: 86608421

Gene position: 978360-978629 (Clockwise)

Preceding gene: 86608420

Following gene: 86608422

Centisome position: 32.11

GC content: 61.48

Gene sequence:

>270_bases
ATGTTTGGTCAAAGCACCACCAGCCCTGAAGCCCTGACAGAAGCCGGCAGCCGGGTTTACCGAGTTGAGTACACCGGTCT
GCTCAACCCGCCCGATGCTCTGGCCACCTCTGCCAAAGTTCGCCGCAGCACCCTGAGCACCACCGTTCCCTACAGTCGGT
TGTCTGCCGAGATGCAGCGCATTCTGCGGATGGGTGGCAAAATCGTGCAGGTCACTGCCTTGTCGGGAGCCAATGCCTCT
CCCGCTCAGGGCAACGGCGCTGCTGAGTGA

Upstream 100 bases:

>100_bases
AACGGCAGCGTGCTGGTTCGCGAGAATAGCCGGTACGGCTTGTTCGCTGGTCAGTTTGCCTGTCTTCCAAACGAAGTCTC
ATAGATACCTGGGGAAAGCG

Downstream 100 bases:

>100_bases
GGGAGGCCCGACGGCCGACTGAAGTTACCGGCAAGGTTGCCCAGGTGTCATGAACAGCTCTGCAACGGTTCGTATGGCAT
CCAACACGGCGGTGCTGCCG

Product: phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod

Products: NA

Alternate protein names: Rod-capping linker protein [H]

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MFGQSTTSPEALTEAGSRVYRVEYTGLLNPPDALATSAKVRRSTLSTTVPYSRLSAEMQRILRMGGKIVQVTALSGANAS
PAQGNGAAE

Sequences:

>Translated_89_residues
MFGQSTTSPEALTEAGSRVYRVEYTGLLNPPDALATSAKVRRSTLSTTVPYSRLSAEMQRILRMGGKIVQVTALSGANAS
PAQGNGAAE
>Mature_89_residues
MFGQSTTSPEALTEAGSRVYRVEYTGLLNPPDALATSAKVRRSTLSTTVPYSRLSAEMQRILRMGGKIVQVTALSGANAS
PAQGNGAAE

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 9316; Mature: 9316

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGQSTTSPEALTEAGSRVYRVEYTGLLNPPDALATSAKVRRSTLSTTVPYSRLSAEMQR
CCCCCCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ILRMGGKIVQVTALSGANASPAQGNGAAE
HHHCCCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGQSTTSPEALTEAGSRVYRVEYTGLLNPPDALATSAKVRRSTLSTTVPYSRLSAEMQR
CCCCCCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ILRMGGKIVQVTALSGANASPAQGNGAAE
HHHCCCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]