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The map label for this gene is cpcF [H]

Identifier: 86608423

GI number: 86608423

Start: 979490

End: 980179

Strand: Direct

Name: cpcF [H]

Synonym: CYB_0943

Alternate gene names: 86608423

Gene position: 979490-980179 (Clockwise)

Preceding gene: 86608422

Following gene: 86608424

Centisome position: 32.15

GC content: 61.88

Gene sequence:

>690_bases
GTGCCTTTGATCAGCGGTTTCAAGTGTACCTTTGACTATTCGTTGCCTATGTCCTCCGCCTCGGCTGCTCAAGCGTTTCC
CATTGCTGTGGCTCAACTGGCAGCAGAATTGGAGCAGGCCACGTCGCCTGAGGAATTGTTGCGGGTGGTGAGGGCGCTGG
GCGCTTTGGGCCAAGTGGAAGGGATCCCCATCTTAATTCGCGCCTTTGGGTTCAATCGCCCTGCAGTGGGGGAAGCCGCC
CTGGAGGAAGTGCTGCGCTTTGGGGAAGCCGCGGTGCAGCCCTTGCTGAGCCATATTGACGGTTTCGATTACGGGGCGCG
GGCCTATTCGGTGCGGGCTTTGGCTCGCATTGGCCATGGGGATGCCTACCCCTTTTTGGCAGAAGCCATTGTGGCGGACT
TTGCCCCCAGTGTACGGCGGGCGGCGACCCGCGGGCTGGGACGGGTGGCGGCCAAGCGGCCCTTGCCCGATCAAGAGCGA
GCCTTGCAACTGTTGCGGCAATGTCTTGCCGATGCCGATTGGGGAGTCCGCTACGCCGCCGTTGGATCCCTGACGGACTT
GGCTCGCCAGGGTGAACAATCTCTGCGACCCTCAGTCGAGGCTGCGCTCCAGATGGCCTTGGAAGATGCGGATCCTCTGA
TCCCTCTCCGCGCCCAGATGAGCTGGCAGGAATTGGCTGCTGAGCCTTAG

Upstream 100 bases:

>100_bases
TTCGATGTGGCGCTTCAGTTGGGGTGGGTGCCGCTGGCTCAGGTGACGGCGGTGATCCTGCCGCAACTGGAGAAGCTCTT
CTAGGATCCTGGGGCGCTCA

Downstream 100 bases:

>100_bases
CTTCCCTGCCCCACTGTGTTTTTCTTAAGTTTTTCTCGTTTTTTTAGGAGCACCATCTATGTCCCTTCCGTTGCTTGCCG
ATCGCCCCACCACCCAAAAT

Product: phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit

Products: NA

Alternate protein names: Phycocyanin operon protein CpcF [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MPLISGFKCTFDYSLPMSSASAAQAFPIAVAQLAAELEQATSPEELLRVVRALGALGQVEGIPILIRAFGFNRPAVGEAA
LEEVLRFGEAAVQPLLSHIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAATRGLGRVAAKRPLPDQER
ALQLLRQCLADADWGVRYAAVGSLTDLARQGEQSLRPSVEAALQMALEDADPLIPLRAQMSWQELAAEP

Sequences:

>Translated_229_residues
MPLISGFKCTFDYSLPMSSASAAQAFPIAVAQLAAELEQATSPEELLRVVRALGALGQVEGIPILIRAFGFNRPAVGEAA
LEEVLRFGEAAVQPLLSHIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAATRGLGRVAAKRPLPDQER
ALQLLRQCLADADWGVRYAAVGSLTDLARQGEQSLRPSVEAALQMALEDADPLIPLRAQMSWQELAAEP
>Mature_228_residues
PLISGFKCTFDYSLPMSSASAAQAFPIAVAQLAAELEQATSPEELLRVVRALGALGQVEGIPILIRAFGFNRPAVGEAAL
EEVLRFGEAAVQPLLSHIDGFDYGARAYSVRALARIGHGDAYPFLAEAIVADFAPSVRRAATRGLGRVAAKRPLPDQERA
LQLLRQCLADADWGVRYAAVGSLTDLARQGEQSLRPSVEAALQMALEDADPLIPLRAQMSWQELAAEP

Specific function: Required for the chromophorylation of the CpcA gene product [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 24522; Mature: 24391

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLISGFKCTFDYSLPMSSASAAQAFPIAVAQLAAELEQATSPEELLRVVRALGALGQVE
CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
GIPILIRAFGFNRPAVGEAALEEVLRFGEAAVQPLLSHIDGFDYGARAYSVRALARIGHG
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
DAYPFLAEAIVADFAPSVRRAATRGLGRVAAKRPLPDQERALQLLRQCLADADWGVRYAA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHH
VGSLTDLARQGEQSLRPSVEAALQMALEDADPLIPLRAQMSWQELAAEP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCHHHHCCCC
>Mature Secondary Structure 
PLISGFKCTFDYSLPMSSASAAQAFPIAVAQLAAELEQATSPEELLRVVRALGALGQVE
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
GIPILIRAFGFNRPAVGEAALEEVLRFGEAAVQPLLSHIDGFDYGARAYSVRALARIGHG
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
DAYPFLAEAIVADFAPSVRRAATRGLGRVAAKRPLPDQERALQLLRQCLADADWGVRYAA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHH
VGSLTDLARQGEQSLRPSVEAALQMALEDADPLIPLRAQMSWQELAAEP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11237320; 11759840; 1743523 [H]