Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608378
Identifier: 86608378
GI number: 86608378
Start: 931015
End: 931674
Strand: Direct
Name: 86608378
Synonym: CYB_0898
Alternate gene names: NA
Gene position: 931015-931674 (Clockwise)
Preceding gene: 86608377
Following gene: 86608379
Centisome position: 30.56
GC content: 61.06
Gene sequence:
>660_bases ATGCCCGAAGCTACCGCCTTTTGGCCGGAATGCAACGCCCCTATCGTGCGGGGGGTGGCCCATTACAGCGATCTGGAGTT GCTGCGGGCCTTTCAACGGCAGCCGGAGGTGGCCCGCTACTTCATCAGCCTGTTTTGCCGCTACTGCCAGTGGGTGGACG GGATCCTTGCCGAGCATCTGCCGCCCGAGCAGTGGGCTGCCTATCGAGAGCAGGTTTGGTTGCGGCTTTACCTGCGCCTA CAGCGCCTAGATGTCCACAGCCTTGTGGAAGAAGCGGCTGGCGAAGGGGATCCTGTGCTGCGACCCTGGCTGGCGGAGCA AACCCGTGAGCTGATCCAATCCTTGGATGGGATCCCCACCCGCCCTCAAGCTTCTTGCAGTCTCGACTCCACCAGAGGCG GGGCGAAGTCCTCTCTTTCACCGGCACTGGCCTGTTATTTGACTGCTGGTTTGGATACCCTGCCGGGGGATCTGCGCTTC ATTCTGCTGCTGCGGGATCGCTTTGGCTGGCCACCGGTTCGCATTGCCGACCAACTCAAGGCTGACGGATATTACCTCGC CCCAGAAGACGTGGATGCCATCGTTGCCTCTGCCCGCCAGATCTTGCTTCAGAACCTACCGACAGATGTGCGTGCCCTCT ATCTGGAGGCAAAGCCCTAG
Upstream 100 bases:
>100_bases CGCATTGGCCTGCGCACCCTGCCGGAGCAGGAGCAGTTGTTATCCGCCTGCCGGGAGATCCTGGAGAATAGCTAGGGATT TTTCTGCGGGAGAAATTCTC
Downstream 100 bases:
>100_bases AAGACTGCCATAGCCCTGTGGCATGGTGGTTTATGGCAAGGTATGGGGCGCTGGCAATCCTTGTTCCCAAGGTGGGTTCT CCTGTTAGGCTGTTTCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MPEATAFWPECNAPIVRGVAHYSDLELLRAFQRQPEVARYFISLFCRYCQWVDGILAEHLPPEQWAAYREQVWLRLYLRL QRLDVHSLVEEAAGEGDPVLRPWLAEQTRELIQSLDGIPTRPQASCSLDSTRGGAKSSLSPALACYLTAGLDTLPGDLRF ILLLRDRFGWPPVRIADQLKADGYYLAPEDVDAIVASARQILLQNLPTDVRALYLEAKP
Sequences:
>Translated_219_residues MPEATAFWPECNAPIVRGVAHYSDLELLRAFQRQPEVARYFISLFCRYCQWVDGILAEHLPPEQWAAYREQVWLRLYLRL QRLDVHSLVEEAAGEGDPVLRPWLAEQTRELIQSLDGIPTRPQASCSLDSTRGGAKSSLSPALACYLTAGLDTLPGDLRF ILLLRDRFGWPPVRIADQLKADGYYLAPEDVDAIVASARQILLQNLPTDVRALYLEAKP >Mature_218_residues PEATAFWPECNAPIVRGVAHYSDLELLRAFQRQPEVARYFISLFCRYCQWVDGILAEHLPPEQWAAYREQVWLRLYLRLQ RLDVHSLVEEAAGEGDPVLRPWLAEQTRELIQSLDGIPTRPQASCSLDSTRGGAKSSLSPALACYLTAGLDTLPGDLRFI LLLRDRFGWPPVRIADQLKADGYYLAPEDVDAIVASARQILLQNLPTDVRALYLEAKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24746; Mature: 24614
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEATAFWPECNAPIVRGVAHYSDLELLRAFQRQPEVARYFISLFCRYCQWVDGILAEHL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC PPEQWAAYREQVWLRLYLRLQRLDVHSLVEEAAGEGDPVLRPWLAEQTRELIQSLDGIPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC RPQASCSLDSTRGGAKSSLSPALACYLTAGLDTLPGDLRFILLLRDRFGWPPVRIADQLK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHC ADGYYLAPEDVDAIVASARQILLQNLPTDVRALYLEAKP CCCEEECHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCC >Mature Secondary Structure PEATAFWPECNAPIVRGVAHYSDLELLRAFQRQPEVARYFISLFCRYCQWVDGILAEHL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC PPEQWAAYREQVWLRLYLRLQRLDVHSLVEEAAGEGDPVLRPWLAEQTRELIQSLDGIPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC RPQASCSLDSTRGGAKSSLSPALACYLTAGLDTLPGDLRFILLLRDRFGWPPVRIADQLK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHC ADGYYLAPEDVDAIVASARQILLQNLPTDVRALYLEAKP CCCEEECHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA