| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is cobD-1 [H]
Identifier: 86608377
GI number: 86608377
Start: 929856
End: 930989
Strand: Direct
Name: cobD-1 [H]
Synonym: CYB_0897
Alternate gene names: 86608377
Gene position: 929856-930989 (Clockwise)
Preceding gene: 86608376
Following gene: 86608378
Centisome position: 30.52
GC content: 63.05
Gene sequence:
>1134_bases GTGGAGCGGCCTCGACACGGTGGCAATTGGGCTTGGGGAGCAGCAATCGCTGGCTGCTCTCCCCAGGAGATTCTGGATTT TTCGGCCAGCTTGAATCCGCTGGGCCCACCGGAATCGGTCTTGCAAGCTCTGACTCAGGCGCTGTCTGCAGCAGACCCGG TTGTAATCAGCCGCTACCCGGATCCCGACTATCGGGACTTGCGCATCTGTTTAGCCAACCATTGGGCTGTCGATCCCGAG TGGATCTTTGTGGGCAATGGGGCAGCGGAGTTGCTCACCTGGGCAGCCCGGGATGCGCAAGGGCGGGAGGTATGGCTGCC CCAGCCTGCTTTTGGGGATTATGCGCGGGCTCTGCGGGCAGCAGGGGCGACCATCAAGCCGCTGCCTTTTTTCCCCGGCC AGGGATCCGCCGGTTTTACCCTTCTGCAGGAACCCCTTCCGGTGGCAGGCAAGGGAAACCGGGTGCTCTGGCTGAACAAC CCTCATAACCCGACGGGCTGGCTGATCCCGCAGCAAGATATCCTGCCTCTCCTGCCCCAGTTCGACCGGGTGGTGGTGGA CGAGGCTTTTATGGACTTTTTGCCGGGGGAGCCCACCCTGAGCTTAAACTCCAGCCCGTCGGCAATGCCCCGCAGCCAAA CCTTGATCCCCCACCTGGCGGCTCATCCCAACACCATCGTCATCCGTTCCCTCACCAAGTTTTTCACCCTGCCCGGCTTG CGCATTGGCTTTGCGGTGGGGCACCCGGATCACTGGCAGCGCTGGCGGCAGTGGCGGGATCCCTGGAGCGTCAACGGATT GGCGGGAGTGGCAGTGGCGGCAGCTTTGGCCGATGAGGACTTCCGCCGGCGCACCTTGGCCTGGCTACCCGTGGCCCGAG AGCATTTGTTCAGGGGTTTGCAAGCACTGCCCGGCTGGGATCCCTGGCCTGGTCAAGCCAATTTTGTGTTGGTGCGCTGC CCTGGCTCTGCCACGCAAATTCAGCGGGCGCTGCTGCAGCGGCACCGGATTCTGGTGCGGGATTGCCTGAGTTTTCCCGA GCTGGGAGATCGCTACCTGCGCATTGGCCTGCGCACCCTGCCGGAGCAGGAGCAGTTGTTATCCGCCTGCCGGGAGATCC TGGAGAATAGCTAG
Upstream 100 bases:
>100_bases GAATCGTCCCCACTTTTGCGGCGGGCAAGTCATTCCGCGAAGCAGTAGCAGGGGGGAAATCTTAATTTCGCCGGGTTGGG ACTCGGCTGCTGGGTAAGGC
Downstream 100 bases:
>100_bases GGATTTTTCTGCGGGAGAAATTCTCATGCCCGAAGCTACCGCCTTTTGGCCGGAATGCAACGCCCCTATCGTGCGGGGGG TGGCCCATTACAGCGATCTG
Product: threonine-phosphate decarboxylase
Products: NA
Alternate protein names: L-threonine-O-3-phosphate decarboxylase [H]
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MERPRHGGNWAWGAAIAGCSPQEILDFSASLNPLGPPESVLQALTQALSAADPVVISRYPDPDYRDLRICLANHWAVDPE WIFVGNGAAELLTWAARDAQGREVWLPQPAFGDYARALRAAGATIKPLPFFPGQGSAGFTLLQEPLPVAGKGNRVLWLNN PHNPTGWLIPQQDILPLLPQFDRVVVDEAFMDFLPGEPTLSLNSSPSAMPRSQTLIPHLAAHPNTIVIRSLTKFFTLPGL RIGFAVGHPDHWQRWRQWRDPWSVNGLAGVAVAAALADEDFRRRTLAWLPVAREHLFRGLQALPGWDPWPGQANFVLVRC PGSATQIQRALLQRHRILVRDCLSFPELGDRYLRIGLRTLPEQEQLLSACREILENS
Sequences:
>Translated_377_residues MERPRHGGNWAWGAAIAGCSPQEILDFSASLNPLGPPESVLQALTQALSAADPVVISRYPDPDYRDLRICLANHWAVDPE WIFVGNGAAELLTWAARDAQGREVWLPQPAFGDYARALRAAGATIKPLPFFPGQGSAGFTLLQEPLPVAGKGNRVLWLNN PHNPTGWLIPQQDILPLLPQFDRVVVDEAFMDFLPGEPTLSLNSSPSAMPRSQTLIPHLAAHPNTIVIRSLTKFFTLPGL RIGFAVGHPDHWQRWRQWRDPWSVNGLAGVAVAAALADEDFRRRTLAWLPVAREHLFRGLQALPGWDPWPGQANFVLVRC PGSATQIQRALLQRHRILVRDCLSFPELGDRYLRIGLRTLPEQEQLLSACREILENS >Mature_377_residues MERPRHGGNWAWGAAIAGCSPQEILDFSASLNPLGPPESVLQALTQALSAADPVVISRYPDPDYRDLRICLANHWAVDPE WIFVGNGAAELLTWAARDAQGREVWLPQPAFGDYARALRAAGATIKPLPFFPGQGSAGFTLLQEPLPVAGKGNRVLWLNN PHNPTGWLIPQQDILPLLPQFDRVVVDEAFMDFLPGEPTLSLNSSPSAMPRSQTLIPHLAAHPNTIVIRSLTKFFTLPGL RIGFAVGHPDHWQRWRQWRDPWSVNGLAGVAVAAALADEDFRRRTLAWLPVAREHLFRGLQALPGWDPWPGQANFVLVRC PGSATQIQRALLQRHRILVRDCLSFPELGDRYLRIGLRTLPEQEQLLSACREILENS
Specific function: Decarboxylates L-threonine-O-3-phosphate to yield (R)-1- amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin [H]
COG id: COG0079
COG function: function code E; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788332, Length=326, Percent_Identity=25.4601226993865, Blast_Score=86, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322075, Length=351, Percent_Identity=23.9316239316239, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR005860 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =4.1.1.81 [H]
Molecular weight: Translated: 41883; Mature: 41883
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERPRHGGNWAWGAAIAGCSPQEILDFSASLNPLGPPESVLQALTQALSAADPVVISRYP CCCCCCCCCEEHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC DPDYRDLRICLANHWAVDPEWIFVGNGAAELLTWAARDAQGREVWLPQPAFGDYARALRA CCCHHHHHHEEHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH AGATIKPLPFFPGQGSAGFTLLQEPLPVAGKGNRVLWLNNPHNPTGWLIPQQDILPLLPQ CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCH FDRVVVDEAFMDFLPGEPTLSLNSSPSAMPRSQTLIPHLAAHPNTIVIRSLTKFFTLPGL HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHCCCCC RIGFAVGHPDHWQRWRQWRDPWSVNGLAGVAVAAALADEDFRRRTLAWLPVAREHLFRGL EEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QALPGWDPWPGQANFVLVRCPGSATQIQRALLQRHRILVRDCLSFPELGDRYLRIGLRTL HHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCC PEQEQLLSACREILENS CCHHHHHHHHHHHHCCC >Mature Secondary Structure MERPRHGGNWAWGAAIAGCSPQEILDFSASLNPLGPPESVLQALTQALSAADPVVISRYP CCCCCCCCCEEHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC DPDYRDLRICLANHWAVDPEWIFVGNGAAELLTWAARDAQGREVWLPQPAFGDYARALRA CCCHHHHHHEEHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH AGATIKPLPFFPGQGSAGFTLLQEPLPVAGKGNRVLWLNNPHNPTGWLIPQQDILPLLPQ CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCH FDRVVVDEAFMDFLPGEPTLSLNSSPSAMPRSQTLIPHLAAHPNTIVIRSLTKFFTLPGL HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHCCCCC RIGFAVGHPDHWQRWRQWRDPWSVNGLAGVAVAAALADEDFRRRTLAWLPVAREHLFRGL EEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QALPGWDPWPGQANFVLVRCPGSATQIQRALLQRHRILVRDCLSFPELGDRYLRIGLRTL HHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCC PEQEQLLSACREILENS CCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]