| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608367
Identifier: 86608367
GI number: 86608367
Start: 919615
End: 921195
Strand: Reverse
Name: 86608367
Synonym: CYB_0887
Alternate gene names: NA
Gene position: 921195-919615 (Counterclockwise)
Preceding gene: 86608368
Following gene: 86608366
Centisome position: 30.24
GC content: 55.22
Gene sequence:
>1581_bases GTGGCGCTGCACAACAACTATGCCCGCTGGAACCAAGCAATTGTTCAATGGGCAACGCTGGGAGTTCCTCACGGTACGCC AGTTTACCTCAGCGTAGATGAAGAAGTTTTAGCAAGTCTAGGCTTAGGCCCAGTTGAGGACTTTTGCCAAGCCGTGCGCG CCCAGGTGGTAGATGGCCAGCGAGTCCAGCTATCAACTCTGCAAAACCAAAGCTTGCCCGAACCAGCAGGAGTTGCCTTC TTGGCGCTGATGGTGCTCGCCGCCAACGACATGGTGAGGGATGAGGAGCTGGATGAGAGGGACTTCTTTACCCATTTTTG TCAACGATTGGGGGTAGGCGGCGACACTCGTCCCACTGGGATGAAAGCTGGAGATGAAGAAGGCCTATGGCAGGAGTGGA ACCAATGGCTAGAGGTAAAGGGATGGATTGCCACCGCCGAGCCAGGGGAAGGCCCGCGCCGGTATTTGAATTACCCCATT TCCCAAACCCTGCTGCGGAAAGCGGACATCCAAAAGCTCTGTTGCCTGTTTTACGAGAAAAACTGGACTACCGCCCGCAG CGAAACTAAGTTACTGGTGGACTTGGCGAGCGAAAAAAACCTGAACCGCCATCTGGAAGAGCTGCTGGACGATCGCCAGC GACACGAGGTACTGGGCGCCGAAATCCTAGCCGTCCATCAGGAGTGGTTAGACGCACAATGCCCGAAACCTGAACAATTT AGCCGACGTCCCCCCACGTGCCTGATTGCAGGGCTGTATCGCACCGAAGATCGGTGGGGGAATCCAGAGTACTACCCTTA CCCCAAAGTTCCGCGTCGTTGGCCAGTTGCCGAGGTGACCGTAGAAAACCTAGGTAGCTTGCGTTGTGAGCGCTCTGGTT GGTTTTTCCCTGTTGGCGCACCGCTTTCTGCTGCCGATCTAACAACGGGGAAGTCATGGCCGATTCGAGATCATGCCCAC TTGCGGGAACTCCAGCTGCCAGCTCGAGACTTTTGGGTCTTGGTGCCCGATCCTGAGAACCCCGAGTCTAGTGCGCTGGC TAGTTGGGGAGCACCTAAATTGGGCAGTCATTTCACAGTGCTGTTTCGGGAAGCACTCTGGTTGGACTTGCAGCAGCTAC GAGAAGAAAAGCTGCTGCAGTGGGAGGGCGATCGCCAGCTTGCCTTTGAAGTAACCTCTGGCTGGTGGGAAATCCAAGAA TGTCAGGTGCTGGCGCCGGTATGGGACGGTTTGTTTTTACAACATCCTGAGCTGAAAGAGGCCTTACAACCACGCGATCG TCTGCACATTGCCTTGGGTGGAGGGCTACGGGTACCGCAAGGACAAGGTTGGCTCGAGGGTCACTTGCCAAAGGTGACTG TGTACGGGTTTCAGCCTACGGTAGCCGTGACTCTAACTGAAGTGCGTACCGGGAGCATATATCTTCCAGAAGACCATCGC TCTACCAACCAGCCTTGGGATTTGCCCGCAGACTTACCTCCCGGTACTTACCAAATCCAAGTACGGGGCGGAACTGCCCA CCAGGAACGCTTTTTGAAGATCCTGAGTTGGGGTGATTTGTCATTAGCTTCCCTAGAGTAG
Upstream 100 bases:
>100_bases CCAATTTGACCTAAAACAAACATAAAGGGATTCAAAAAATAGGAAACTGGGCATTCAACGCCTGCCTAGGCTTGAGGAAG GAACCCAGGGCGAGGTTACT
Downstream 100 bases:
>100_bases AGGCATAACTCTATGTCGAAAAAATCTTCTCGGTCAGAGCAAACTTACTGGGGCTTTCGCACCCATACCTCCAGATACAA ACCCCAAAAGTTGCTGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MALHNNYARWNQAIVQWATLGVPHGTPVYLSVDEEVLASLGLGPVEDFCQAVRAQVVDGQRVQLSTLQNQSLPEPAGVAF LALMVLAANDMVRDEELDERDFFTHFCQRLGVGGDTRPTGMKAGDEEGLWQEWNQWLEVKGWIATAEPGEGPRRYLNYPI SQTLLRKADIQKLCCLFYEKNWTTARSETKLLVDLASEKNLNRHLEELLDDRQRHEVLGAEILAVHQEWLDAQCPKPEQF SRRPPTCLIAGLYRTEDRWGNPEYYPYPKVPRRWPVAEVTVENLGSLRCERSGWFFPVGAPLSAADLTTGKSWPIRDHAH LRELQLPARDFWVLVPDPENPESSALASWGAPKLGSHFTVLFREALWLDLQQLREEKLLQWEGDRQLAFEVTSGWWEIQE CQVLAPVWDGLFLQHPELKEALQPRDRLHIALGGGLRVPQGQGWLEGHLPKVTVYGFQPTVAVTLTEVRTGSIYLPEDHR STNQPWDLPADLPPGTYQIQVRGGTAHQERFLKILSWGDLSLASLE
Sequences:
>Translated_526_residues MALHNNYARWNQAIVQWATLGVPHGTPVYLSVDEEVLASLGLGPVEDFCQAVRAQVVDGQRVQLSTLQNQSLPEPAGVAF LALMVLAANDMVRDEELDERDFFTHFCQRLGVGGDTRPTGMKAGDEEGLWQEWNQWLEVKGWIATAEPGEGPRRYLNYPI SQTLLRKADIQKLCCLFYEKNWTTARSETKLLVDLASEKNLNRHLEELLDDRQRHEVLGAEILAVHQEWLDAQCPKPEQF SRRPPTCLIAGLYRTEDRWGNPEYYPYPKVPRRWPVAEVTVENLGSLRCERSGWFFPVGAPLSAADLTTGKSWPIRDHAH LRELQLPARDFWVLVPDPENPESSALASWGAPKLGSHFTVLFREALWLDLQQLREEKLLQWEGDRQLAFEVTSGWWEIQE CQVLAPVWDGLFLQHPELKEALQPRDRLHIALGGGLRVPQGQGWLEGHLPKVTVYGFQPTVAVTLTEVRTGSIYLPEDHR STNQPWDLPADLPPGTYQIQVRGGTAHQERFLKILSWGDLSLASLE >Mature_525_residues ALHNNYARWNQAIVQWATLGVPHGTPVYLSVDEEVLASLGLGPVEDFCQAVRAQVVDGQRVQLSTLQNQSLPEPAGVAFL ALMVLAANDMVRDEELDERDFFTHFCQRLGVGGDTRPTGMKAGDEEGLWQEWNQWLEVKGWIATAEPGEGPRRYLNYPIS QTLLRKADIQKLCCLFYEKNWTTARSETKLLVDLASEKNLNRHLEELLDDRQRHEVLGAEILAVHQEWLDAQCPKPEQFS RRPPTCLIAGLYRTEDRWGNPEYYPYPKVPRRWPVAEVTVENLGSLRCERSGWFFPVGAPLSAADLTTGKSWPIRDHAHL RELQLPARDFWVLVPDPENPESSALASWGAPKLGSHFTVLFREALWLDLQQLREEKLLQWEGDRQLAFEVTSGWWEIQEC QVLAPVWDGLFLQHPELKEALQPRDRLHIALGGGLRVPQGQGWLEGHLPKVTVYGFQPTVAVTLTEVRTGSIYLPEDHRS TNQPWDLPADLPPGTYQIQVRGGTAHQERFLKILSWGDLSLASLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59755; Mature: 59624
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALHNNYARWNQAIVQWATLGVPHGTPVYLSVDEEVLASLGLGPVEDFCQAVRAQVVDGQ CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHHHHCCCC RVQLSTLQNQSLPEPAGVAFLALMVLAANDMVRDEELDERDFFTHFCQRLGVGGDTRPTG EEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC MKAGDEEGLWQEWNQWLEVKGWIATAEPGEGPRRYLNYPISQTLLRKADIQKLCCLFYEK CCCCCCCCHHHHHHHHEEECEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCC NWTTARSETKLLVDLASEKNLNRHLEELLDDRQRHEVLGAEILAVHQEWLDAQCPKPEQF CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SRRPPTCLIAGLYRTEDRWGNPEYYPYPKVPRRWPVAEVTVENLGSLRCERSGWFFPVGA CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCEEECCC PLSAADLTTGKSWPIRDHAHLRELQLPARDFWVLVPDPENPESSALASWGAPKLGSHFTV CCCHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCHHHH LFREALWLDLQQLREEKLLQWEGDRQLAFEVTSGWWEIQECQVLAPVWDGLFLQHPELKE HHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCEEEECCCEEEHHHHCCHHCCCCHHHH ALQPRDRLHIALGGGLRVPQGQGWLEGHLPKVTVYGFQPTVAVTLTEVRTGSIYLPEDHR HCCCCCEEEEEECCCEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEECCCCCC STNQPWDLPADLPPGTYQIQVRGGTAHQERFLKILSWGDLSLASLE CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure ALHNNYARWNQAIVQWATLGVPHGTPVYLSVDEEVLASLGLGPVEDFCQAVRAQVVDGQ CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHHHHCCCC RVQLSTLQNQSLPEPAGVAFLALMVLAANDMVRDEELDERDFFTHFCQRLGVGGDTRPTG EEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC MKAGDEEGLWQEWNQWLEVKGWIATAEPGEGPRRYLNYPISQTLLRKADIQKLCCLFYEK CCCCCCCCHHHHHHHHEEECEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCC NWTTARSETKLLVDLASEKNLNRHLEELLDDRQRHEVLGAEILAVHQEWLDAQCPKPEQF CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SRRPPTCLIAGLYRTEDRWGNPEYYPYPKVPRRWPVAEVTVENLGSLRCERSGWFFPVGA CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCEEECCC PLSAADLTTGKSWPIRDHAHLRELQLPARDFWVLVPDPENPESSALASWGAPKLGSHFTV CCCHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCHHHH LFREALWLDLQQLREEKLLQWEGDRQLAFEVTSGWWEIQECQVLAPVWDGLFLQHPELKE HHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCEEEECCCEEEHHHHCCHHCCCCHHHH ALQPRDRLHIALGGGLRVPQGQGWLEGHLPKVTVYGFQPTVAVTLTEVRTGSIYLPEDHR HCCCCCEEEEEECCCEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEECCCCCC STNQPWDLPADLPPGTYQIQVRGGTAHQERFLKILSWGDLSLASLE CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA