| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608366
Identifier: 86608366
GI number: 86608366
Start: 918277
End: 919602
Strand: Reverse
Name: 86608366
Synonym: CYB_0886
Alternate gene names: NA
Gene position: 919602-918277 (Counterclockwise)
Preceding gene: 86608367
Following gene: 86608365
Centisome position: 30.18
GC content: 50.68
Gene sequence:
>1326_bases ATGTCGAAAAAATCTTCTCGGTCAGAGCAAACTTACTGGGGCTTTCGCACCCATACCTCCAGATACAAACCCCAAAAGTT GCTGAATTACTTACAAAAGCGGGTTACTCAAGAAAACTTGGCCGATGTTGTGTCTCATGTTCGTATTGAGAAGGGCATTA AGGAAAGAAGTAGGGGAGAGTATTACTTCTACTTGGGTATTAAGACAAATGCGCGCTCTGATTGGTCATCCACACAAAAC ACCCTTGAGCAACTGATTAAAACAGTGAGAGGTATCAGTATAGTTAGGATTCGAAGAGAAGGATTTTGCTGGGAAGATAT TCGACACATGGTGGGTATCGCCTATGAGTTGGAACGGGATACCCAACCCATTGAGTATTTCCAAGTCAAGCGGCCACCTA AAGTCAACCCACTTGGTTTGGAAACACCTATAGCAGAGGCGGCAGGAAGCGATCGCTCCCAGCCGTGCGAACAGCTGCTT TGGTGGTTATCGGCAGCCGGTTCTGGTTCTTGGGAAACCTTTCAAGCCGTATGCAGTCACCTAGATCTAGTCCAACCGCG TCGGTTGTGGCGTCGGCTGCAGTTGTTAGGGCATCTTCTGGCAGCTCAGGATGGTCAACACTGGCAAATGCAGCCACCTT CCCTGCAGCCAGTGAGCAAAAATTGCTACGTGCTGTACGGTCAGCGAAACGCCAGCCTGCAAGAGTCTTTGCAGCAGTTT GGTCGCCTTGTGAAGATCCCTCAACCTCGAAGGGATGCTCCACCCTGTTGGCAGCTTGAGCTGCAAGCTGATGCTGCCAA TGCAATTGCCGAGTTACGGACCAAATACCCTGCCCTAGCCATTCGTCCGGTCGAGGCCCCTCCTCCTTGGGCTGATTGGG TAGCTACGCTAAAGGTCGTCGATTGGGTGCCACTTCACCGCTATCGACTAAAGCGCTACGATGGGAGCAGCTTCGTAGAT GTGCCAGACGCCGAGGAAACGGGTTTCTACGAGCTGTACGAGGAGGGATCCCAACAGCAGCATGCCCTATTCTACGACCG CCAGCACAACGCTTGGTACAGCGCCGAATGGTACAGTTTACGTTTTTTGGCTTTGACTCATCTTGCTCCCAAAAACCTAT CAGTTAGTTACGACCCCAATGCCCAAGAACTATCGATCCCTATCAGCCAGCGCTGGCCGCTAGCCTACGAACGCTACTTG GTCATGCAATCGGGTTGTCTGCCTCGCTACAATCGCACAACAGAAGAACTGATTTATCAGAACATTGCACCAACTGTGTG GCAAGTCATTGGTGAACAGCTGCCGTTTTTTGATCTGGAGAAATAG
Upstream 100 bases:
>100_bases AATCCAAGTACGGGGCGGAACTGCCCACCAGGAACGCTTTTTGAAGATCCTGAGTTGGGGTGATTTGTCATTAGCTTCCC TAGAGTAGAGGCATAACTCT
Downstream 100 bases:
>100_bases TTACAGTTTTTGCCAAAGGCAAAGGAAAAACCATGTACGACCTCGTCGGTATCTATCAGCGGTTAGATCGAATCTACCAG CTTTACATTAGAAGTGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MSKKSSRSEQTYWGFRTHTSRYKPQKLLNYLQKRVTQENLADVVSHVRIEKGIKERSRGEYYFYLGIKTNARSDWSSTQN TLEQLIKTVRGISIVRIRREGFCWEDIRHMVGIAYELERDTQPIEYFQVKRPPKVNPLGLETPIAEAAGSDRSQPCEQLL WWLSAAGSGSWETFQAVCSHLDLVQPRRLWRRLQLLGHLLAAQDGQHWQMQPPSLQPVSKNCYVLYGQRNASLQESLQQF GRLVKIPQPRRDAPPCWQLELQADAANAIAELRTKYPALAIRPVEAPPPWADWVATLKVVDWVPLHRYRLKRYDGSSFVD VPDAEETGFYELYEEGSQQQHALFYDRQHNAWYSAEWYSLRFLALTHLAPKNLSVSYDPNAQELSIPISQRWPLAYERYL VMQSGCLPRYNRTTEELIYQNIAPTVWQVIGEQLPFFDLEK
Sequences:
>Translated_441_residues MSKKSSRSEQTYWGFRTHTSRYKPQKLLNYLQKRVTQENLADVVSHVRIEKGIKERSRGEYYFYLGIKTNARSDWSSTQN TLEQLIKTVRGISIVRIRREGFCWEDIRHMVGIAYELERDTQPIEYFQVKRPPKVNPLGLETPIAEAAGSDRSQPCEQLL WWLSAAGSGSWETFQAVCSHLDLVQPRRLWRRLQLLGHLLAAQDGQHWQMQPPSLQPVSKNCYVLYGQRNASLQESLQQF GRLVKIPQPRRDAPPCWQLELQADAANAIAELRTKYPALAIRPVEAPPPWADWVATLKVVDWVPLHRYRLKRYDGSSFVD VPDAEETGFYELYEEGSQQQHALFYDRQHNAWYSAEWYSLRFLALTHLAPKNLSVSYDPNAQELSIPISQRWPLAYERYL VMQSGCLPRYNRTTEELIYQNIAPTVWQVIGEQLPFFDLEK >Mature_440_residues SKKSSRSEQTYWGFRTHTSRYKPQKLLNYLQKRVTQENLADVVSHVRIEKGIKERSRGEYYFYLGIKTNARSDWSSTQNT LEQLIKTVRGISIVRIRREGFCWEDIRHMVGIAYELERDTQPIEYFQVKRPPKVNPLGLETPIAEAAGSDRSQPCEQLLW WLSAAGSGSWETFQAVCSHLDLVQPRRLWRRLQLLGHLLAAQDGQHWQMQPPSLQPVSKNCYVLYGQRNASLQESLQQFG RLVKIPQPRRDAPPCWQLELQADAANAIAELRTKYPALAIRPVEAPPPWADWVATLKVVDWVPLHRYRLKRYDGSSFVDV PDAEETGFYELYEEGSQQQHALFYDRQHNAWYSAEWYSLRFLALTHLAPKNLSVSYDPNAQELSIPISQRWPLAYERYLV MQSGCLPRYNRTTEELIYQNIAPTVWQVIGEQLPFFDLEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51431; Mature: 51300
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKSSRSEQTYWGFRTHTSRYKPQKLLNYLQKRVTQENLADVVSHVRIEKGIKERSRGE CCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YYFYLGIKTNARSDWSSTQNTLEQLIKTVRGISIVRIRREGFCWEDIRHMVGIAYELERD EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHEECCC TQPIEYFQVKRPPKVNPLGLETPIAEAAGSDRSQPCEQLLWWLSAAGSGSWETFQAVCSH CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH LDLVQPRRLWRRLQLLGHLLAAQDGQHWQMQPPSLQPVSKNCYVLYGQRNASLQESLQQF HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH GRLVKIPQPRRDAPPCWQLELQADAANAIAELRTKYPALAIRPVEAPPPWADWVATLKVV HHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH DWVPLHRYRLKRYDGSSFVDVPDAEETGFYELYEEGSQQQHALFYDRQHNAWYSAEWYSL HCCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCCHHEEEECCCCCEECCHHHHH RFLALTHLAPKNLSVSYDPNAQELSIPISQRWPLAYERYLVMQSGCLPRYNRTTEELIYQ HHHHHHHCCCCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH NIAPTVWQVIGEQLPFFDLEK HCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SKKSSRSEQTYWGFRTHTSRYKPQKLLNYLQKRVTQENLADVVSHVRIEKGIKERSRGE CCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YYFYLGIKTNARSDWSSTQNTLEQLIKTVRGISIVRIRREGFCWEDIRHMVGIAYELERD EEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHEECCC TQPIEYFQVKRPPKVNPLGLETPIAEAAGSDRSQPCEQLLWWLSAAGSGSWETFQAVCSH CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH LDLVQPRRLWRRLQLLGHLLAAQDGQHWQMQPPSLQPVSKNCYVLYGQRNASLQESLQQF HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH GRLVKIPQPRRDAPPCWQLELQADAANAIAELRTKYPALAIRPVEAPPPWADWVATLKVV HHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH DWVPLHRYRLKRYDGSSFVDVPDAEETGFYELYEEGSQQQHALFYDRQHNAWYSAEWYSL HCCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCCHHEEEECCCCCEECCHHHHH RFLALTHLAPKNLSVSYDPNAQELSIPISQRWPLAYERYLVMQSGCLPRYNRTTEELIYQ HHHHHHHCCCCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH NIAPTVWQVIGEQLPFFDLEK HCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA