Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608349
Identifier: 86608349
GI number: 86608349
Start: 898964
End: 900535
Strand: Direct
Name: 86608349
Synonym: CYB_0868
Alternate gene names: NA
Gene position: 898964-900535 (Clockwise)
Preceding gene: 86608347
Following gene: 86608354
Centisome position: 29.51
GC content: 59.16
Gene sequence:
>1572_bases ATGCTTGGCCAAGTATCCAAATCTGGTTGGGGGATCTGTTCAGCCTTGCTGCCTCTGTTGGCGGGGGTTGCCCTCGGCTG TGGGGGTGGCGGCGGCAGTTCTCCACCTCTTCCTCCGCCAGGTGGCGGGCCCATCATCCTGAGAGTGGATCCGGCCAGTG GCCCCTTTACCAAACTGGCAGACGCAGTTGCAGAGGCGCAGCGACTTCAGACTGCCACAGCCGGCCTGGAGGTGCTGATC GAGATTTTGGGGACGGGCAGGGAAACTTTGCAAAGCAACCTGGCCCTGGATGGCGGCGATGGCACCAACGGCGGTCGCAT TCGCATCACCAGCTCCACCGCCTATGAGATCCTGACCGGGCTCTTTGACGTGATTGTAGCCAGCCAAACCAGCCTGCAGG GGGTAGATGTGGTGCTGGGGGGTGGACGGGTGCAGGTGAACAACGGCACTTTTCAGCCGCGCAAGGTCACCCTCAACGAC CCTCGCTCCAACATCTTGGTCAACGGCAATGCTGCGGTTCTAGAGGGAGCCTTGAACCAATTGGCCGAGATTTTGTGCCA GCAATTTTTGGATCCCTGTGTGCAGATCTCTGGGAATGGCCGGGTCAGCCGTGTCTCGCCGATTGTCAGTAAAACGGGTG GGGTGGGCATAGGCACTGTGCCGGGCAGCAGTCCCATCCTTGAAAACAACACAATTCTCCTGCAGGCTTTGGGGGCTTTG GCCGTTCGCTATGGTGACAACTCCGGCGGGATCTTCCGCAACAACCAAATCGAAGGGGATCCACCCACGGCTGGAGCCGG CTTGGTACTGCAGGCGCGGCAAGCAGGTACGAGTGGCACTACCGGGATTCAGCTGGATGGGGCAGGCTCAATTCCATCCA TTCAATCCAACCGGATCGGCGTGGGCAGGATAGCCGGCAGTGTCGGCATTCGTATTTTGCAGGGAACCCAGGCCCGCACC ATTTCCGGGAATACGTTCCTAGCTCGGGGCGAGGGCGTAGGAGTGGCAATTCAGGCGGCCCCCGGCACCCCAGATGCGGT AGTCGCAGCCTACCTGGCTGGCAATACTTTCCAAGGAAACTTTGCTCAGAGGGTCACTGGGGAACCTGCGCCCATCCCAG CTCCTGCACCGACGCCGACGGAAACGCCCACGCCAACTCCTGCACCGACACCCTCTCCCACCCCCACACCTCCAGTATTG GGCACCGGCCCCATTCAAGTTACCTTGAGTTGGAACACCATCGATGACCTTAACCTGTATGTTACGGATCCCACGAAGCA GACCGTGTTTTTTAACAACCGAATTGTCCCTTCTGGAGGACGGCTGGATGTGGATGCCAATGCCGACTGTGTTGCCGTAA CCCAAAATGCTGTGGAGAATGTCTTTTGGGCTTCCACCCCGCCCTCAGGGCCATACTTCATCGAGGTGAGATTGTTCCGG CGCTGCTCCCAATCAACTGCTCCCATTCCCTTTACCGTAACGGTTCGCAAGAGCGGAAACGTCGCGCAGACTTTTAGCGG CTTGGCCACATCCCCTGGCTTGGCGGGTAGGTTTACGTTTTCCTTCCCCTGA
Upstream 100 bases:
>100_bases CTTGGCCATCTGTACCTTGACCCCGTGGCAGTTGTTTGTTGCTCTTGTTTGTTGCTGTAACAACCTTAACCGCTAAGCGC TTGTAAGGGGCTTTCCACCT
Downstream 100 bases:
>100_bases AGTTAGCCAAGGCTGGCAGCCATCTGCCCTGCCCACGTATGGCCATTTTGGTTCAGACTAGGACACCACACCTATACTCA TACTCAGATCTTTGATTGCA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MLGQVSKSGWGICSALLPLLAGVALGCGGGGGSSPPLPPPGGGPIILRVDPASGPFTKLADAVAEAQRLQTATAGLEVLI EILGTGRETLQSNLALDGGDGTNGGRIRITSSTAYEILTGLFDVIVASQTSLQGVDVVLGGGRVQVNNGTFQPRKVTLND PRSNILVNGNAAVLEGALNQLAEILCQQFLDPCVQISGNGRVSRVSPIVSKTGGVGIGTVPGSSPILENNTILLQALGAL AVRYGDNSGGIFRNNQIEGDPPTAGAGLVLQARQAGTSGTTGIQLDGAGSIPSIQSNRIGVGRIAGSVGIRILQGTQART ISGNTFLARGEGVGVAIQAAPGTPDAVVAAYLAGNTFQGNFAQRVTGEPAPIPAPAPTPTETPTPTPAPTPSPTPTPPVL GTGPIQVTLSWNTIDDLNLYVTDPTKQTVFFNNRIVPSGGRLDVDANADCVAVTQNAVENVFWASTPPSGPYFIEVRLFR RCSQSTAPIPFTVTVRKSGNVAQTFSGLATSPGLAGRFTFSFP
Sequences:
>Translated_523_residues MLGQVSKSGWGICSALLPLLAGVALGCGGGGGSSPPLPPPGGGPIILRVDPASGPFTKLADAVAEAQRLQTATAGLEVLI EILGTGRETLQSNLALDGGDGTNGGRIRITSSTAYEILTGLFDVIVASQTSLQGVDVVLGGGRVQVNNGTFQPRKVTLND PRSNILVNGNAAVLEGALNQLAEILCQQFLDPCVQISGNGRVSRVSPIVSKTGGVGIGTVPGSSPILENNTILLQALGAL AVRYGDNSGGIFRNNQIEGDPPTAGAGLVLQARQAGTSGTTGIQLDGAGSIPSIQSNRIGVGRIAGSVGIRILQGTQART ISGNTFLARGEGVGVAIQAAPGTPDAVVAAYLAGNTFQGNFAQRVTGEPAPIPAPAPTPTETPTPTPAPTPSPTPTPPVL GTGPIQVTLSWNTIDDLNLYVTDPTKQTVFFNNRIVPSGGRLDVDANADCVAVTQNAVENVFWASTPPSGPYFIEVRLFR RCSQSTAPIPFTVTVRKSGNVAQTFSGLATSPGLAGRFTFSFP >Mature_523_residues MLGQVSKSGWGICSALLPLLAGVALGCGGGGGSSPPLPPPGGGPIILRVDPASGPFTKLADAVAEAQRLQTATAGLEVLI EILGTGRETLQSNLALDGGDGTNGGRIRITSSTAYEILTGLFDVIVASQTSLQGVDVVLGGGRVQVNNGTFQPRKVTLND PRSNILVNGNAAVLEGALNQLAEILCQQFLDPCVQISGNGRVSRVSPIVSKTGGVGIGTVPGSSPILENNTILLQALGAL AVRYGDNSGGIFRNNQIEGDPPTAGAGLVLQARQAGTSGTTGIQLDGAGSIPSIQSNRIGVGRIAGSVGIRILQGTQART ISGNTFLARGEGVGVAIQAAPGTPDAVVAAYLAGNTFQGNFAQRVTGEPAPIPAPAPTPTETPTPTPAPTPSPTPTPPVL GTGPIQVTLSWNTIDDLNLYVTDPTKQTVFFNNRIVPSGGRLDVDANADCVAVTQNAVENVFWASTPPSGPYFIEVRLFR RCSQSTAPIPFTVTVRKSGNVAQTFSGLATSPGLAGRFTFSFP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53262; Mature: 53262
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGQVSKSGWGICSALLPLLAGVALGCGGGGGSSPPLPPPGGGPIILRVDPASGPFTKLA CCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHH DAVAEAQRLQTATAGLEVLIEILGTGRETLQSNLALDGGDGTNGGRIRITSSTAYEILTG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEECCCCCCCCEEEEECCHHHHHHHH LFDVIVASQTSLQGVDVVLGGGRVQVNNGTFQPRKVTLNDPRSNILVNGNAAVLEGALNQ HHHHHHHCCCCCCCEEEEEECCEEEECCCCCCCEEEEECCCCCCEEECCCHHHHHHHHHH LAEILCQQFLDPCVQISGNGRVSRVSPIVSKTGGVGIGTVPGSSPILENNTILLQALGAL HHHHHHHHHHHHHEEECCCCCEEEECHHHHCCCCCEEECCCCCCCEECCCEEEEEECCEE AVRYGDNSGGIFRNNQIEGDPPTAGAGLVLQARQAGTSGTTGIQLDGAGSIPSIQSNRIG EEEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCC VGRIAGSVGIRILQGTQARTISGNTFLARGEGVGVAIQAAPGTPDAVVAAYLAGNTFQGN HHEEHHCCCEEEEECCCEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCC FAQRVTGEPAPIPAPAPTPTETPTPTPAPTPSPTPTPPVLGTGPIQVTLSWNTIDDLNLY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE VTDPTKQTVFFNNRIVPSGGRLDVDANADCVAVTQNAVENVFWASTPPSGPYFIEVRLFR EECCCCEEEEECCEECCCCCEEEECCCCCEEEEEHHHHHHEEECCCCCCCCEEEEEHHHH RCSQSTAPIPFTVTVRKSGNVAQTFSGLATSPGLAGRFTFSFP HHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC >Mature Secondary Structure MLGQVSKSGWGICSALLPLLAGVALGCGGGGGSSPPLPPPGGGPIILRVDPASGPFTKLA CCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHH DAVAEAQRLQTATAGLEVLIEILGTGRETLQSNLALDGGDGTNGGRIRITSSTAYEILTG HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEECCCCCCCCEEEEECCHHHHHHHH LFDVIVASQTSLQGVDVVLGGGRVQVNNGTFQPRKVTLNDPRSNILVNGNAAVLEGALNQ HHHHHHHCCCCCCCEEEEEECCEEEECCCCCCCEEEEECCCCCCEEECCCHHHHHHHHHH LAEILCQQFLDPCVQISGNGRVSRVSPIVSKTGGVGIGTVPGSSPILENNTILLQALGAL HHHHHHHHHHHHHEEECCCCCEEEECHHHHCCCCCEEECCCCCCCEECCCEEEEEECCEE AVRYGDNSGGIFRNNQIEGDPPTAGAGLVLQARQAGTSGTTGIQLDGAGSIPSIQSNRIG EEEECCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCC VGRIAGSVGIRILQGTQARTISGNTFLARGEGVGVAIQAAPGTPDAVVAAYLAGNTFQGN HHEEHHCCCEEEEECCCEEEECCCEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCC FAQRVTGEPAPIPAPAPTPTETPTPTPAPTPSPTPTPPVLGTGPIQVTLSWNTIDDLNLY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE VTDPTKQTVFFNNRIVPSGGRLDVDANADCVAVTQNAVENVFWASTPPSGPYFIEVRLFR EECCCCEEEEECCEECCCCCEEEECCCCCEEEEEHHHHHHEEECCCCCCCCEEEEEHHHH RCSQSTAPIPFTVTVRKSGNVAQTFSGLATSPGLAGRFTFSFP HHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA