Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
---|---|
Accession | NC_007776 |
Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608354
Identifier: 86608354
GI number: 86608354
Start: 904305
End: 904628
Strand: Direct
Name: 86608354
Synonym: CYB_0873
Alternate gene names: NA
Gene position: 904305-904628 (Clockwise)
Preceding gene: 86608349
Following gene: 86608358
Centisome position: 29.68
GC content: 62.96
Gene sequence:
>324_bases ATGGCTGTATCCCGTTCACCCTCGAATGGCTCATCCCGACGAGAGCAGCAACATCCGCAATATGCCACCGACCGAGCTGC GCTCGATGAGCTGATGGTGCAGGCTCAGGAGAGGCCCCTCTCCGAGTGGGTGCTGGCGGAAGTCGCCCGTTTGCGCATCC GTTACCACGGCTTCCCCGGCGCCTGGGATCTGCAGCGGGATTTGGATCAAATCCTGGAACAGTGGGGCCTGAGCGAAGAA GAGCTGTTCGCCCGGACTCGCCAGATCCATGCCCGCGGCCAGGTGTACGACCGCAGCTTTAGCACGCGAGACGACTGGGC CTAG
Upstream 100 bases:
>100_bases TTCTGCCTTCTCGGGATCCCATGCCATCAGGGATCCCAATCCTCGATATTGAAAGTCTCCAGGGGAACTCAGCTAGAGTG AGAAAAAAGGAGGGAGGCCG
Downstream 100 bases:
>100_bases TGGAGGGTTTGGGTCGGGATCCCTTACCCCCCTGAGAGAGGGGAGTTTGCCGGTTGTTCATGAGACGTGAAGCTGCTCGG CAAAGATGGGATCCAAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MAVSRSPSNGSSRREQQHPQYATDRAALDELMVQAQERPLSEWVLAEVARLRIRYHGFPGAWDLQRDLDQILEQWGLSEE ELFARTRQIHARGQVYDRSFSTRDDWA
Sequences:
>Translated_107_residues MAVSRSPSNGSSRREQQHPQYATDRAALDELMVQAQERPLSEWVLAEVARLRIRYHGFPGAWDLQRDLDQILEQWGLSEE ELFARTRQIHARGQVYDRSFSTRDDWA >Mature_106_residues AVSRSPSNGSSRREQQHPQYATDRAALDELMVQAQERPLSEWVLAEVARLRIRYHGFPGAWDLQRDLDQILEQWGLSEEE LFARTRQIHARGQVYDRSFSTRDDWA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12542; Mature: 12411
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVSRSPSNGSSRREQQHPQYATDRAALDELMVQAQERPLSEWVLAEVARLRIRYHGFPG CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC AWDLQRDLDQILEQWGLSEEELFARTRQIHARGQVYDRSFSTRDDWA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCC >Mature Secondary Structure AVSRSPSNGSSRREQQHPQYATDRAALDELMVQAQERPLSEWVLAEVARLRIRYHGFPG CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC AWDLQRDLDQILEQWGLSEEELFARTRQIHARGQVYDRSFSTRDDWA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA