Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
---|---|
Accession | NC_007776 |
Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608333
Identifier: 86608333
GI number: 86608333
Start: 884301
End: 885257
Strand: Direct
Name: 86608333
Synonym: CYB_0851
Alternate gene names: NA
Gene position: 884301-885257 (Clockwise)
Preceding gene: 86608331
Following gene: 86608337
Centisome position: 29.03
GC content: 61.13
Gene sequence:
>957_bases TTGCGAAACCTGTTTCTTACCGGCGCTAGCGGCTGCCTGGGGCACTATGTGTTGGAGCGCCTGGCCCAGCAAAGGGATCC CGAGTTTCCGGAGCGGCCCGCCTACCACCTGTACGTTCTCATCCGCGAGACCAGCCGCCTACGGCTGCCCCTGGAACGGC TGCCCGCCCCTATCACCCTAGTACCCGGCGATCTCCTGCGCATCCGGGAACAGGCTGCCCTGCTACGGCAGATGGACGGG CTGATCCACATGGCGGCAGCTTGGGGGGATCCCGCCCTGGCTTGGGCCGTGAATGTTACCCACACCCTGGAGCTCTTTCA GTTGTTGGATCCGGAGCGCTGTCAGCAGGTGATCTACTTTTCCACGGCCAGCCTTTTGAACCAGGACCTGGAGCCTTTGG CCATTGCCGGACGGGCCGGCACCGACTACATCCGCAGCAAGTACGAGATGCTGCTGCGGCGGCAGGAAAGCGGCTTCTGG CCGGAGCGCCTGCTCACCCTTTATCCCACCCTGCTCTTTGGCGGCAGCCCCCACCACCCCTACTCCCACATCACTGCCGG CCTCAAGGACGTTCTCCGCTGGCTGGATCTGATCCGCTTTTTGCGGGTGGATGCCAGCTTCCACTTTATCCACGCTGCCG ATGTGGCCGAGATGGTCGCCCACTGGGTGGCTCATCCCCCAGGCGCAGGAGATTGGGTGTTGGGCAACTCCCCCTTGTCT TTGGATGAGTGCGTGGAACAGGTGTGTGCCTATTTCAAAAAGCGGATTTATTTCCGCGTGCCCCTGCCTTTGGCTTTGGT TCGCGGCTTGGCCTTCTTGTTTCGGGTGCGGCTTTCCGAGTGGGATGAATATTGTCTGCGCCAGCGCCATTTTGTTTACC CGGCCATTTCCCCAGAAACCCTGGGTTTGCGCTGCCGGTTTCCCACTTTGGCCTCTCTTTTGGATACCTACCTCTAG
Upstream 100 bases:
>100_bases TCTTGCAGGGGAATTGAGGGTTCAGGCAGTCCGGCAGACAGAAGCTGAAGCGGTACACTAGTCAGAAGCTTTTTTCATCG AGTCCCGTTGGGAAGACCTC
Downstream 100 bases:
>100_bases ACCACCTTTGAGTAACAGTAGAACTGGACGCTGCTTCCTTTCCCTCTGGGACGGGGGGATGAGAGCCGAGGACCCAAGGG ATCCCACTCGCCTCCGACAG
Product: NAD-dependent epimerase/dehydratase family protein
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase; NmrA Family Protein; NAD Dependent Epimerase/Dehydratase Family; Nucleoside-Diphosphate-Sugar Epimerases
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITLVPGDLLRIREQAALLRQMDG LIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYFSTASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFW PERLLTLYPTLLFGGSPHHPYSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLS LDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPETLGLRCRFPTLASLLDTYL
Sequences:
>Translated_318_residues MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITLVPGDLLRIREQAALLRQMDG LIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYFSTASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFW PERLLTLYPTLLFGGSPHHPYSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLS LDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPETLGLRCRFPTLASLLDTYL >Mature_318_residues MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITLVPGDLLRIREQAALLRQMDG LIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYFSTASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFW PERLLTLYPTLLFGGSPHHPYSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLS LDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPETLGLRCRFPTLASLLDTYL
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36484; Mature: 36484
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITL CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEE VPGDLLRIREQAALLRQMDGLIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHH STASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFWPERLLTLYPTLLFGGSPHHP HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC YSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLS HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCEECCCCCC LDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPET HHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC LGLRCRFPTLASLLDTYL CCEEECCHHHHHHHHHCC >Mature Secondary Structure MRNLFLTGASGCLGHYVLERLAQQRDPEFPERPAYHLYVLIRETSRLRLPLERLPAPITL CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEE VPGDLLRIREQAALLRQMDGLIHMAAAWGDPALAWAVNVTHTLELFQLLDPERCQQVIYF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHH STASLLNQDLEPLAIAGRAGTDYIRSKYEMLLRRQESGFWPERLLTLYPTLLFGGSPHHP HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC YSHITAGLKDVLRWLDLIRFLRVDASFHFIHAADVAEMVAHWVAHPPGAGDWVLGNSPLS HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCEECCCCCC LDECVEQVCAYFKKRIYFRVPLPLALVRGLAFLFRVRLSEWDEYCLRQRHFVYPAISPET HHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC LGLRCRFPTLASLLDTYL CCEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA