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The map label for this gene is recJ-1 [H]

Identifier: 86608310

GI number: 86608310

Start: 858587

End: 861259

Strand: Direct

Name: recJ-1 [H]

Synonym: CYB_0828

Alternate gene names: 86608310

Gene position: 858587-861259 (Clockwise)

Preceding gene: 86608307

Following gene: 86608311

Centisome position: 28.18

GC content: 62.81

Gene sequence:

>2673_bases
ATGGCCGGGATCCCTGCTCAACGCTGGCTGTTTCATCCGGTGGACAAGTTGGCTGCCCAGAGCTTGGCCGAGGCAGTGGG
GATCTCGCCCATATTGGCTCAGATCTTACTCAATCGCGGGCTCTCCAGCCCTGCTGCCGTGCAGCAGTACCTGCAGCCGG
ATCCCGCCCACCTGCCCCCACCCAGCCGGGATTTTGCCGATTTGCCCCTGGCGGTGGACTTGCTGGACGGGGCGATTCGC
CGACAAGAGCCCATTGCCATTTGCGGCGACTACGATGCCGACGGCATGACCAGCACGGCCCTGCTGCTGCGGGCTTTGCA
GGACGCTCCAGTGCATTACCGCATCCCCAGCCGCATGACGGAGGGCTATGGCCTCAACAGCCGCATGGTGCAAGAGCTGC
ACCGAGAGGGGGTGCGCCTCATTCTCACCGTGGACAACGGCATCTCCGCCCACGAGCCCATCCAACTGGCCAAAGCTCTA
GGCTTGACAGTGATCGTGACGGATCACCACGACTTGCCGCCCCAGTTGCCCCCTGCCGATGCCATCCTCAATCCCAAGCA
GCTCCCCGTTTCTTCTCCCTATCGGGGGATGGCCGGGGTGGGAGTTGCCTACCTCCTGGCCCAGGCGCTGGCCGAGCGCC
GTGGTGATGGCCATCTGCAGCGGGTGGCCCTGGAACTGTTTACTGTGGGCACCATTGCCGATCTGGCGCCGCTGACGGGG
GTTAACCGCCTTTGGGTGCGGCAGGGGCTGCACCTCTTGCCCACCTCCCAGGTGGCAGGGATCCGCGCCCTTCTGCAGGT
GATGGGCATGCAGGGATCCCTGGAGGGGCTGCGGCCTGAGTGGATTGGGTTTGGCCTGGGGCCGCGCATCAATGCCGTTG
GGCGAATTGGCCGGGCGAGAATGGGGATCCAGTTGCTGACCACCGACGATCCCCTGCAAGCAGAGAAACTGGCCCGCCGC
TGCGAGCGGCTCAACCAGGTGCGGCAGCAGATGTGCGGGCGCATCGAGGCAGAAGCCCTAGAGCAAATTGCCCAGCAAGG
CCGGGATTTGCAGCAGGAACGGGTATTGACGATTTTGGGATCCCCTCAGCGGAGATGGCATAAAGGGGTGATCGGCATTG
TGGCCTCGCGGTTGGCAGAGCGTTTTGGCTGTCCGGTGTTCATCGGCAGCCAGTCGCGGCAAGGGGAGATCAGTGGCTCG
GCGCGGCAGGGGATCCCCGAGTTTGACGTGTTTCAAGCGTTGGAGTTTTGCAAGGATCTGTTCACCAAGCACGGCGGCCA
CCCCGCTGCCGGGGGATTTAGCCTGAGAGCAGAAGACTGGCCTTTTTTTGAAGAACGGTTGCGGCAGTTTGCCCAACAGC
AGTTGCAGCCGGAGCAGATCCAGCCGCTGGTGCAAATCGATGCCGAAGTGTCGCTGTCAGATCTCACCCTTGACCTCTAT
CGAGAGCTGCAGCATCTGCAGCCCTGTGGCATCGGCAATCCTGAGCCGGTCTTCTACAGCCGCAACCTGCAGGTTCTGCA
ACAGCAGCGATTTGGCCCAGTTCCCGGCCACCTGAAGCTGCTGCTCCGGGATCCTGCTCTCCCTACGCAACGCTCCCATG
GGTTACGTGCTACTCGGACGGAGTCCTCTTGTCCGGGCAGGAGCGACTCAGCTGTCAAAACCTCCAGTTACGACACTGAT
GGGTTATCGCTGGGCAACGCTTTGGGCAACACTTTGGCGAACGGGTCAGCAGTGGGGAGCACAAACCCGAGGCCACAGCG
CCCCCTCTGGGCTATCCGTTGGCGGGGAGCGGAAACCCATCCGCTGCCGGAGCGAGTTGATGTAGCCTACACGCTCAAGG
CCAAAACATGGCAGGGAGAAACCCAACTGGAGCTGGAAATTGTCGGGATCCAACCTGCCCAAGAGGCTGCCACTGCCGGC
AACCCCCCTCTCGAGAAAACAGCGCCCCGCACCCCTGATGGGAGCAAGTCTCCCATCTCCCCCGCCTCTCTGGATGCCAC
TCCTCCCATGCCCAACTCCAAGCCCTCGACTGGCTCCCAGAGGGGGACAGAGCCCTCACCTCTGTTGATCTGGCGCCCCA
CCCCCCAGCCCACCCAGCCTTTGCGTTGGCAAGCTGTAGACCGATTTTCTGTCCTCTGGCCTCAGGCGCAGGGAACCATC
CTGTTCTACGGCTTCCGCCGCCCCTCGCTGGTCTTGTCTTCAAGGCCTACGGCCCGCTATCGCGAACGGCGGTACCTGAC
TCTCCACTACGACCGTCCCCAAGCCGGCCACCGCTATGATCAACTCTGGTTGTGGAGCTGGCCCCCTTCTCTGGATCACC
TCAAGTGGCTGCTCTGTTGCACCCCCAGCAGCGAGCTGTTGATTGCCGTCCATCAGCAAGCGGTGCCCCTGCCCTCCGCT
GCCAGCTTGCAACGCCAGCTCCGCCAATACCTGCAAACCCACAGCCAGGTGGATCTGCTGCGCTTGGCCCAGCAGTGGTG
GCTGTCTCCGGCAGTGTTGGTGGCAGGATTACGCTCCCTGGGGTATGCCTGCCCGGATTTTGGCCCCACGGGATCCCTCG
GCGAAGAACTGGAAGCCCAGCAAGCTTGGTACAGCAGCTCCTGGCAGCAGGTTGCCGCCCTGCTTCAGCGATCCCACCTG
GATTCTTCTGCTGCAGAGGCCCATGGGGATTAA

Upstream 100 bases:

>100_bases
AGATTCAGAGGAGCGTTTTGAGCTAACGTCAAAAGGATACCCTATAGGCCAACTGTAGCACTGCCTACCCTCTATCCCCA
TCCAAGCCCCACCCTTCCCT

Downstream 100 bases:

>100_bases
ACTGCTGCTCGGCTCCGACTACCACGGCAGCCCTCGGCTGATCCGGCAGGCCCTTGCCCATCTGCCGGAGGTGGATGCTT
ACATCAACTGTGGGGATTTC

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 890; Mature: 889

Protein sequence:

>890_residues
MAGIPAQRWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFADLPLAVDLLDGAIR
RQEPIAICGDYDADGMTSTALLLRALQDAPVHYRIPSRMTEGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKAL
GLTVIVTDHHDLPPQLPPADAILNPKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVALELFTVGTIADLAPLTG
VNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRARMGIQLLTTDDPLQAEKLARR
CERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGS
ARQGIPEFDVFQALEFCKDLFTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLY
RELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQRSHGLRATRTESSCPGRSDSAVKTSSYDTD
GLSLGNALGNTLANGSAVGSTNPRPQRPLWAIRWRGAETHPLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQEAATAG
NPPLEKTAPRTPDGSKSPISPASLDATPPMPNSKPSTGSQRGTEPSPLLIWRPTPQPTQPLRWQAVDRFSVLWPQAQGTI
LFYGFRRPSLVLSSRPTARYRERRYLTLHYDRPQAGHRYDQLWLWSWPPSLDHLKWLLCCTPSSELLIAVHQQAVPLPSA
ASLQRQLRQYLQTHSQVDLLRLAQQWWLSPAVLVAGLRSLGYACPDFGPTGSLGEELEAQQAWYSSSWQQVAALLQRSHL
DSSAAEAHGD

Sequences:

>Translated_890_residues
MAGIPAQRWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFADLPLAVDLLDGAIR
RQEPIAICGDYDADGMTSTALLLRALQDAPVHYRIPSRMTEGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKAL
GLTVIVTDHHDLPPQLPPADAILNPKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVALELFTVGTIADLAPLTG
VNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRARMGIQLLTTDDPLQAEKLARR
CERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGS
ARQGIPEFDVFQALEFCKDLFTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLY
RELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQRSHGLRATRTESSCPGRSDSAVKTSSYDTD
GLSLGNALGNTLANGSAVGSTNPRPQRPLWAIRWRGAETHPLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQEAATAG
NPPLEKTAPRTPDGSKSPISPASLDATPPMPNSKPSTGSQRGTEPSPLLIWRPTPQPTQPLRWQAVDRFSVLWPQAQGTI
LFYGFRRPSLVLSSRPTARYRERRYLTLHYDRPQAGHRYDQLWLWSWPPSLDHLKWLLCCTPSSELLIAVHQQAVPLPSA
ASLQRQLRQYLQTHSQVDLLRLAQQWWLSPAVLVAGLRSLGYACPDFGPTGSLGEELEAQQAWYSSSWQQVAALLQRSHL
DSSAAEAHGD
>Mature_889_residues
AGIPAQRWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFADLPLAVDLLDGAIRR
QEPIAICGDYDADGMTSTALLLRALQDAPVHYRIPSRMTEGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALG
LTVIVTDHHDLPPQLPPADAILNPKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVALELFTVGTIADLAPLTGV
NRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRARMGIQLLTTDDPLQAEKLARRC
ERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSA
RQGIPEFDVFQALEFCKDLFTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLYR
ELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQRSHGLRATRTESSCPGRSDSAVKTSSYDTDG
LSLGNALGNTLANGSAVGSTNPRPQRPLWAIRWRGAETHPLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQEAATAGN
PPLEKTAPRTPDGSKSPISPASLDATPPMPNSKPSTGSQRGTEPSPLLIWRPTPQPTQPLRWQAVDRFSVLWPQAQGTIL
FYGFRRPSLVLSSRPTARYRERRYLTLHYDRPQAGHRYDQLWLWSWPPSLDHLKWLLCCTPSSELLIAVHQQAVPLPSAA
SLQRQLRQYLQTHSQVDLLRLAQQWWLSPAVLVAGLRSLGYACPDFGPTGSLGEELEAQQAWYSSSWQQVAALLQRSHLD
SSAAEAHGD

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=510, Percent_Identity=33.7254901960784, Blast_Score=249, Evalue=5e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 98084; Mature: 97953

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIPAQRWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPP
CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
PSRDFADLPLAVDLLDGAIRRQEPIAICGDYDADGMTSTALLLRALQDAPVHYRIPSRMT
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCHHHH
EGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPAD
CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCC
AILNPKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVALELFTVGTIADLAPLTG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
VNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRAR
CHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
MGIQLLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILG
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHEEC
SPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQALEFCKDL
CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
FTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLY
HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCHHHCCHHHHCCCCCCHHHHHHHHH
RELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQRSHGLRATRT
HHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEECCC
ESSCPGRSDSAVKTSSYDTDGLSLGNALGNTLANGSAVGSTNPRPQRPLWAIRWRGAETH
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCC
PLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQEAATAGNPPLEKTAPRTPDGSKSPIS
CCCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PASLDATPPMPNSKPSTGSQRGTEPSPLLIWRPTPQPTQPLRWQAVDRFSVLWPQAQGTI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHEECCCCCCCE
LFYGFRRPSLVLSSRPTARYRERRYLTLHYDRPQAGHRYDQLWLWSWPPSLDHLKWLLCC
EEEECCCCCEEECCCCCHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCHHHEEEEEEE
TPSSELLIAVHQQAVPLPSAASLQRQLRQYLQTHSQVDLLRLAQQWWLSPAVLVAGLRSL
CCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GYACPDFGPTGSLGEELEAQQAWYSSSWQQVAALLQRSHLDSSAAEAHGD
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure 
AGIPAQRWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPP
CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC
PSRDFADLPLAVDLLDGAIRRQEPIAICGDYDADGMTSTALLLRALQDAPVHYRIPSRMT
CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCHHHH
EGYGLNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPAD
CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCC
AILNPKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVALELFTVGTIADLAPLTG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
VNRLWVRQGLHLLPTSQVAGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRAR
CHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
MGIQLLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILG
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHEEC
SPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQALEFCKDL
CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
FTKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLY
HHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCHHHCCHHHHCCCCCCHHHHHHHHH
RELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDPALPTQRSHGLRATRT
HHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCEECCC
ESSCPGRSDSAVKTSSYDTDGLSLGNALGNTLANGSAVGSTNPRPQRPLWAIRWRGAETH
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCC
PLPERVDVAYTLKAKTWQGETQLELEIVGIQPAQEAATAGNPPLEKTAPRTPDGSKSPIS
CCCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PASLDATPPMPNSKPSTGSQRGTEPSPLLIWRPTPQPTQPLRWQAVDRFSVLWPQAQGTI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHEECCCCCCCE
LFYGFRRPSLVLSSRPTARYRERRYLTLHYDRPQAGHRYDQLWLWSWPPSLDHLKWLLCC
EEEECCCCCEEECCCCCHHHHCCEEEEEEECCCCCCCCCCEEEEEECCCCHHHEEEEEEE
TPSSELLIAVHQQAVPLPSAASLQRQLRQYLQTHSQVDLLRLAQQWWLSPAVLVAGLRSL
CCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GYACPDFGPTGSLGEELEAQQAWYSSSWQQVAALLQRSHLDSSAAEAHGD
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]