| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608273
Identifier: 86608273
GI number: 86608273
Start: 815416
End: 816528
Strand: Reverse
Name: 86608273
Synonym: CYB_0789
Alternate gene names: NA
Gene position: 816528-815416 (Counterclockwise)
Preceding gene: 86608274
Following gene: 86608272
Centisome position: 26.8
GC content: 61.37
Gene sequence:
>1113_bases ATGAATCCCGTTCCTCTCTATGTGGCGGCAACAGCGCACGGGTTTGGGCACGTTACCCGTCTGGCGGCAGTGGTGAATGC TTTGCTGCGGCAGGATCCCCATGTTCTGCCCATCTTTGTTACGCCGGCTCCCCGCTGGCTCCTGGAGCGTTACGTGGAGG GGAAGTTTCTCCATCGGCCGCGGGCGTTGGATGTGGGGGTGGTGCAGCCGGATGGGCTGCAAGCGGATCTGCCGGCTACG TTGGCTGCCCTCAAGGCGTTTAAAGCCAGCGCTGCGGAGCTTGTTCGAGAAGAAGCGGATTTCATTCGAGCCCAGGGGGT GCCTTTGGTGTTGGCGGATGTGCCGCCCATTGCTGCGGCGATTGCCCAGGCTGCTGGGATCCCTTGCTGGATGGCCAGTA ATTTTGGCTGGGATTTCATCTACCAAGAATACGGCCCGGAGTTTCAACCGTTTGTGGCCTGGATCCAGGAGCTCTATGGG CAATGTGACCTTCTGTTTCGCCTGCCCTTTAGCGAGAGCATGGTCGCGTCAGCGGTGCGGAGCACTAGCGCTTTTCCGCG TCAGCAGGAGGTGGGGCTGACGGGATCGGATCCCCGCTACCCACCAGAAGAGGTCGCCGCCCAGTTGGGGTTACACCCGG ATCAACCCAGGGCTTTGTTCACCTTTGGCGGGCTGGGGGTGCAGGGGTTTCCTTACGAGCGGCTCCAAGATTTTCCCGAC TGGCAGTTTCTCACCTTTGATCCGGAAGCTCCCCCCTTGCCCAACTTGCGGGTTTTGGATGGGCGGGTGTGGCGACCGGT GGATGTGATGCCCCTCTGCCGCTGGGTGGTGTCCAAGCCGGGCTATGGCACTTTGGCAGAGGCCCTGCGCAGCCGCACAC CTATGGCCTGTGTTACCCGCTCTGGGTTTGCCGAGTCGCCGTTGCTGGTTGAGGGTCTGCAGCGCTACGGCTGGCATCGC ATTCTCTCGCCAGAGGAGTTTTTTCAAGGATCCTGGGACTTTTTGCGGGATCCCGCCCACCCACCCCAGAGGCCGGATGG ATTGGATCTGCAGGGGAATGAAACCCTGGCTGCTGCCTTAGAGGCATTCCTGCGGGGAAGGGATGCCGGGTAG
Upstream 100 bases:
>100_bases GATCCTGTTCTGTCCTGAGGCGGTTGCGTTCGCGCCAGCGGGACGGAGTCCTATCGCGTTAGCGGGACGGAGTCCTATCG CGTTAGCGGTGCAGAGCACA
Downstream 100 bases:
>100_bases CATAAAGGGCAGCTTCCTGCAGCGGATCCCATGGCCAGCAGCTCGACAGAATCTCTGCGGCAACTGTACGAAGAACTGCC CTACCCCAATGTTTCCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MNPVPLYVAATAHGFGHVTRLAAVVNALLRQDPHVLPIFVTPAPRWLLERYVEGKFLHRPRALDVGVVQPDGLQADLPAT LAALKAFKASAAELVREEADFIRAQGVPLVLADVPPIAAAIAQAAGIPCWMASNFGWDFIYQEYGPEFQPFVAWIQELYG QCDLLFRLPFSESMVASAVRSTSAFPRQQEVGLTGSDPRYPPEEVAAQLGLHPDQPRALFTFGGLGVQGFPYERLQDFPD WQFLTFDPEAPPLPNLRVLDGRVWRPVDVMPLCRWVVSKPGYGTLAEALRSRTPMACVTRSGFAESPLLVEGLQRYGWHR ILSPEEFFQGSWDFLRDPAHPPQRPDGLDLQGNETLAAALEAFLRGRDAG
Sequences:
>Translated_370_residues MNPVPLYVAATAHGFGHVTRLAAVVNALLRQDPHVLPIFVTPAPRWLLERYVEGKFLHRPRALDVGVVQPDGLQADLPAT LAALKAFKASAAELVREEADFIRAQGVPLVLADVPPIAAAIAQAAGIPCWMASNFGWDFIYQEYGPEFQPFVAWIQELYG QCDLLFRLPFSESMVASAVRSTSAFPRQQEVGLTGSDPRYPPEEVAAQLGLHPDQPRALFTFGGLGVQGFPYERLQDFPD WQFLTFDPEAPPLPNLRVLDGRVWRPVDVMPLCRWVVSKPGYGTLAEALRSRTPMACVTRSGFAESPLLVEGLQRYGWHR ILSPEEFFQGSWDFLRDPAHPPQRPDGLDLQGNETLAAALEAFLRGRDAG >Mature_370_residues MNPVPLYVAATAHGFGHVTRLAAVVNALLRQDPHVLPIFVTPAPRWLLERYVEGKFLHRPRALDVGVVQPDGLQADLPAT LAALKAFKASAAELVREEADFIRAQGVPLVLADVPPIAAAIAQAAGIPCWMASNFGWDFIYQEYGPEFQPFVAWIQELYG QCDLLFRLPFSESMVASAVRSTSAFPRQQEVGLTGSDPRYPPEEVAAQLGLHPDQPRALFTFGGLGVQGFPYERLQDFPD WQFLTFDPEAPPLPNLRVLDGRVWRPVDVMPLCRWVVSKPGYGTLAEALRSRTPMACVTRSGFAESPLLVEGLQRYGWHR ILSPEEFFQGSWDFLRDPAHPPQRPDGLDLQGNETLAAALEAFLRGRDAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40946; Mature: 40946
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPVPLYVAATAHGFGHVTRLAAVVNALLRQDPHVLPIFVTPAPRWLLERYVEGKFLHRP CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHHCCC RALDVGVVQPDGLQADLPATLAALKAFKASAAELVREEADFIRAQGVPLVLADVPPIAAA CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH IAQAAGIPCWMASNFGWDFIYQEYGPEFQPFVAWIQELYGQCDLLFRLPFSESMVASAVR HHHHCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH STSAFPRQQEVGLTGSDPRYPPEEVAAQLGLHPDQPRALFTFGGLGVQGFPYERLQDFPD HHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHCCCC WQFLTFDPEAPPLPNLRVLDGRVWRPVDVMPLCRWVVSKPGYGTLAEALRSRTPMACVTR CEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEC SGFAESPLLVEGLQRYGWHRILSPEEFFQGSWDFLRDPAHPPQRPDGLDLQGNETLAAAL CCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH EAFLRGRDAG HHHHHCCCCC >Mature Secondary Structure MNPVPLYVAATAHGFGHVTRLAAVVNALLRQDPHVLPIFVTPAPRWLLERYVEGKFLHRP CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCHHHCCC RALDVGVVQPDGLQADLPATLAALKAFKASAAELVREEADFIRAQGVPLVLADVPPIAAA CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH IAQAAGIPCWMASNFGWDFIYQEYGPEFQPFVAWIQELYGQCDLLFRLPFSESMVASAVR HHHHCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH STSAFPRQQEVGLTGSDPRYPPEEVAAQLGLHPDQPRALFTFGGLGVQGFPYERLQDFPD HHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHCCCC WQFLTFDPEAPPLPNLRVLDGRVWRPVDVMPLCRWVVSKPGYGTLAEALRSRTPMACVTR CEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEC SGFAESPLLVEGLQRYGWHRILSPEEFFQGSWDFLRDPAHPPQRPDGLDLQGNETLAAAL CCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH EAFLRGRDAG HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA