Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is 86608242
Identifier: 86608242
GI number: 86608242
Start: 779825
End: 780937
Strand: Reverse
Name: 86608242
Synonym: CYB_0758
Alternate gene names: NA
Gene position: 780937-779825 (Counterclockwise)
Preceding gene: 86608243
Following gene: 86608241
Centisome position: 25.63
GC content: 57.77
Gene sequence:
>1113_bases ATGCTTAGGCCCAGTCTTCTGTTCTCCGGCTCGGCTTTGTTGGGTTTGCTGTCCTTGCCGTTTTTGATCGGCGAATGTGG CTGGTTGGCCTCGTCTCGGAAAGGGCGGAGTGCGGCCACTGAGGTTTCTCTGCAAGCTTGGGAGCACTCTCTGCCGTCAT CCCAGACCTTGTTTGAAGATGAACCAGGTTCTGAATCTTGGCTCAGGCGGCAAGCCCAACTGCAAGAACGGGTACAACAG CTTGAGCAGCGATCTCTCGCTCACCAGCAGCAGGTCTATCAATGGCTTGCGCAACAGGCAGATCCCCAGCCCGCGGGGGT TGTTGGCCGTTCCAACCCAAGCCTTGCCGTGCCGGCACGGCCTCGGCGTCAGGATTCCACTCTCTCTCAATCCTCTGCTC CGGCGGATCTTCCCAATGAGCTGGCGCTGCTAACCCAGTCCATCCAACAGGAGCCGGGAAATGCGCAGCTTTATCTGCAA CGGGCGCAATACTTCTGGCGTCAGTCTCAGGAGGATCCTGCTGCTTTACCGCAGCCGGAGCATGCTTCTGCCATTGCTTA CCTGATGCGCTCCGCTCTGCGGGATCTGGATATTGCTATTGCTTTGGATCCCTATCTGGCTGAAGCCTATTTGCTCAAGG CCAAAATCCAACACGAGCGTTTGCAAGAACCTGAGCAGGCTCTGGCAACCTTGTCTCCTCTGGATCGGATTGCCTATCAC AACCCGCAACTGCACTTGATCCGCTCTCGCATCTGGGCCGAACAAGGCCATCTGGAATCGGCGTTTGATGTGTCGCATCT GGCGATTGAGCTGGCCAAGCAAAATCAAAGTGCTGCCGATCTTTTCGAGGCCTATGTCCATCGCGGCCTGATGTGGGCCA GCATCTGCGACTTCAATTTGGCCGTTCAGGATTTCAGCCGGGCTATCGAGGTGCAGCCCCAGCGGGCTGAAGGTTACTAC CACCGCGGTATGGCGCGCGCTTACCAGGGAGAGGATAGGGCTGGTGCCGCTTCCGATTTGGGTAGCGCTTTGATGTTGTG GCGGGCTTCCGGCACGGGATCCCCGGGGCTGCTGGAATATGTAGAAGCGGTGCGGAGGGAACTGTTGCGGTAG
Upstream 100 bases:
>100_bases GGCTCAGGGCAAGCATCGCCGAAACTCTGGACACTGCGGCTGCGGCGAACTAGTTTAGAGGCAACTCTTTACTTCTAAGC TATTTCAAGGGGTGGGATCC
Downstream 100 bases:
>100_bases CTCAGCTCTGGCGGGGTTTTTGCTGAAGATCTGAAGCGCTGGGTTTGGGGTCTTTGCCCAGGAGCATTTGGCAAGTTCGT CCAAGCCAGGCCAGGATGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MLRPSLLFSGSALLGLLSLPFLIGECGWLASSRKGRSAATEVSLQAWEHSLPSSQTLFEDEPGSESWLRRQAQLQERVQQ LEQRSLAHQQQVYQWLAQQADPQPAGVVGRSNPSLAVPARPRRQDSTLSQSSAPADLPNELALLTQSIQQEPGNAQLYLQ RAQYFWRQSQEDPAALPQPEHASAIAYLMRSALRDLDIAIALDPYLAEAYLLKAKIQHERLQEPEQALATLSPLDRIAYH NPQLHLIRSRIWAEQGHLESAFDVSHLAIELAKQNQSAADLFEAYVHRGLMWASICDFNLAVQDFSRAIEVQPQRAEGYY HRGMARAYQGEDRAGAASDLGSALMLWRASGTGSPGLLEYVEAVRRELLR
Sequences:
>Translated_370_residues MLRPSLLFSGSALLGLLSLPFLIGECGWLASSRKGRSAATEVSLQAWEHSLPSSQTLFEDEPGSESWLRRQAQLQERVQQ LEQRSLAHQQQVYQWLAQQADPQPAGVVGRSNPSLAVPARPRRQDSTLSQSSAPADLPNELALLTQSIQQEPGNAQLYLQ RAQYFWRQSQEDPAALPQPEHASAIAYLMRSALRDLDIAIALDPYLAEAYLLKAKIQHERLQEPEQALATLSPLDRIAYH NPQLHLIRSRIWAEQGHLESAFDVSHLAIELAKQNQSAADLFEAYVHRGLMWASICDFNLAVQDFSRAIEVQPQRAEGYY HRGMARAYQGEDRAGAASDLGSALMLWRASGTGSPGLLEYVEAVRRELLR >Mature_370_residues MLRPSLLFSGSALLGLLSLPFLIGECGWLASSRKGRSAATEVSLQAWEHSLPSSQTLFEDEPGSESWLRRQAQLQERVQQ LEQRSLAHQQQVYQWLAQQADPQPAGVVGRSNPSLAVPARPRRQDSTLSQSSAPADLPNELALLTQSIQQEPGNAQLYLQ RAQYFWRQSQEDPAALPQPEHASAIAYLMRSALRDLDIAIALDPYLAEAYLLKAKIQHERLQEPEQALATLSPLDRIAYH NPQLHLIRSRIWAEQGHLESAFDVSHLAIELAKQNQSAADLFEAYVHRGLMWASICDFNLAVQDFSRAIEVQPQRAEGYY HRGMARAYQGEDRAGAASDLGSALMLWRASGTGSPGLLEYVEAVRRELLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41305; Mature: 41305
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPSLLFSGSALLGLLSLPFLIGECGWLASSRKGRSAATEVSLQAWEHSLPSSQTLFED CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC EPGSESWLRRQAQLQERVQQLEQRSLAHQQQVYQWLAQQADPQPAGVVGRSNPSLAVPAR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCC PRRQDSTLSQSSAPADLPNELALLTQSIQQEPGNAQLYLQRAQYFWRQSQEDPAALPQPE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC HASAIAYLMRSALRDLDIAIALDPYLAEAYLLKAKIQHERLQEPEQALATLSPLDRIAYH HHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC NPQLHLIRSRIWAEQGHLESAFDVSHLAIELAKQNQSAADLFEAYVHRGLMWASICDFNL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH AVQDFSRAIEVQPQRAEGYYHRGMARAYQGEDRAGAASDLGSALMLWRASGTGSPGLLEY HHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCHHHHH VEAVRRELLR HHHHHHHHCC >Mature Secondary Structure MLRPSLLFSGSALLGLLSLPFLIGECGWLASSRKGRSAATEVSLQAWEHSLPSSQTLFED CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC EPGSESWLRRQAQLQERVQQLEQRSLAHQQQVYQWLAQQADPQPAGVVGRSNPSLAVPAR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCC PRRQDSTLSQSSAPADLPNELALLTQSIQQEPGNAQLYLQRAQYFWRQSQEDPAALPQPE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC HASAIAYLMRSALRDLDIAIALDPYLAEAYLLKAKIQHERLQEPEQALATLSPLDRIAYH HHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC NPQLHLIRSRIWAEQGHLESAFDVSHLAIELAKQNQSAADLFEAYVHRGLMWASICDFNL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH AVQDFSRAIEVQPQRAEGYYHRGMARAYQGEDRAGAASDLGSALMLWRASGTGSPGLLEY HHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCCCHHHHH VEAVRRELLR HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA