Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
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Accession | NC_007776 |
Length | 3,046,682 |
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The map label for this gene is yueF [H]
Identifier: 86608241
GI number: 86608241
Start: 778412
End: 779665
Strand: Reverse
Name: yueF [H]
Synonym: CYB_0757
Alternate gene names: 86608241
Gene position: 779665-778412 (Counterclockwise)
Preceding gene: 86608242
Following gene: 86608238
Centisome position: 25.59
GC content: 59.49
Gene sequence:
>1254_bases ATGAGCCGAAGACAACTGACCATCTCCGTATCCTCTGTAGCCCTGGTGGTGGCCACAGGGATGCTGTTGTTGCTGCTGTG GCAACTGCGCAGCTTGGTGCTGACGGTGATGATCGCGGTGGTGGTGGCGGCAGCGCTGGCTCCCCTGGTGGATCTGGCCG AGCGATTACGCATCCCCCGCTGGCTGGGGGTTGTGCTGGTGTATTTGAGCTTAATTGCCGGGATTGCCGGCTTGGCTCTG CTTATTGGCCCGACGGTGGCGACTCAGACCCAGCGGTTGCTGACGAGGCTGCCTTTCTATCTGGAGCAGTTGCAACTGTT GGTGGACACCTGGATTGCTGATCTGGCGGGGGTGGATCCGGCGGCGCTGGACTACTTAAACCAGTTGCTCGATCCTCAGT CGTTGATGAGCTGGGCAGTTCGCTCGGGACAACGGGTGCTGGTGCAGTCTTTCGACTTCACCCGCGGTTTGCTGGGCGGT CTGCTAACCACGGTGCTGACCCTCTTCATTTCCGGCTACATGCTGGTGAGCGGCTCTGACTTGGTGCGGGGCTTGGTGGA GTTGTTTCCTTATCCCTGGAATGACCGGCTGGCTCAGCAGGTACACCCGATGGCTCAGCGCATGGGGGGCTACATCCAGG GGCGGGTGCTGGTCTCTGCCATTTTGGGTGTGATGATCACCGTCTCGCTTCGCTTTCTGGGCCTGTCGGAGTTTGCTCTG GCGCTGGGGGTGATCGCTGGGTTTACCAACCTTATCCCCTTCATTGGGCCGGTACTGGGATCCCTGCCCGCCTTGGTGGT GGCAATCGTTCAGGGGGGCTGGACTTTTTTGTGGGTGCTGATCCTATACGTTGCCGTTCAAAACCTGGAAACCTATGTGT TGGATCCTCTGTTGGTGGGATCCTCGGTGCGGGTGAAGCCCTTGTATCAGTTGCTGGCGGTGCTGGGGGGCACCCAGTTG TTGGGTATTGTTGGGGCGGTGATCGCCCCCCCGTGGGTGGCCGGTATGGCGGTGCTGTTGGAGAACCTTTATCTGAAGCC CAAGCAGGAGGCAGAGGTTCGATCCAGGCTGTATGCTCGGGCCACCGAGGCTGCCGGTTCTTTGGCTTTGCCGGGGATGG ATTCTGCCGACGCGAGCAACCCAGAGCCATCTTTTTCCTCTGGTCCGAATGGCTCTTCAAATGAGCCGGAAGAGTTGCCA CAGGAAGAAAGTCTCTCGCCTGCGGATCCCGTAGCCGGAAGAAGTCCTTATTAG
Upstream 100 bases:
>100_bases AGGAGCATTTGGCAAGTTCGTCCAAGCCAGGCCAGGATGGTAGAGCCATCTGTTACCTAGGGGGGGCTTGAACGCCCCCT GAAGAGAACCCAGCCAAGTG
Downstream 100 bases:
>100_bases CAAGCTTCTCATCTATTCGCCTCTGTTGCTCTCGGAGAAGGGCTGCTGTGGTTTTGGGTAGGGTGCACATCTCAGCGGTG ACGGGCATCGAGGATAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MSRRQLTISVSSVALVVATGMLLLLLWQLRSLVLTVMIAVVVAAALAPLVDLAERLRIPRWLGVVLVYLSLIAGIAGLAL LIGPTVATQTQRLLTRLPFYLEQLQLLVDTWIADLAGVDPAALDYLNQLLDPQSLMSWAVRSGQRVLVQSFDFTRGLLGG LLTTVLTLFISGYMLVSGSDLVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITVSLRFLGLSEFAL ALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQNLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQL LGIVGAVIAPPWVAGMAVLLENLYLKPKQEAEVRSRLYARATEAAGSLALPGMDSADASNPEPSFSSGPNGSSNEPEELP QEESLSPADPVAGRSPY
Sequences:
>Translated_417_residues MSRRQLTISVSSVALVVATGMLLLLLWQLRSLVLTVMIAVVVAAALAPLVDLAERLRIPRWLGVVLVYLSLIAGIAGLAL LIGPTVATQTQRLLTRLPFYLEQLQLLVDTWIADLAGVDPAALDYLNQLLDPQSLMSWAVRSGQRVLVQSFDFTRGLLGG LLTTVLTLFISGYMLVSGSDLVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITVSLRFLGLSEFAL ALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQNLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQL LGIVGAVIAPPWVAGMAVLLENLYLKPKQEAEVRSRLYARATEAAGSLALPGMDSADASNPEPSFSSGPNGSSNEPEELP QEESLSPADPVAGRSPY >Mature_416_residues SRRQLTISVSSVALVVATGMLLLLLWQLRSLVLTVMIAVVVAAALAPLVDLAERLRIPRWLGVVLVYLSLIAGIAGLALL IGPTVATQTQRLLTRLPFYLEQLQLLVDTWIADLAGVDPAALDYLNQLLDPQSLMSWAVRSGQRVLVQSFDFTRGLLGGL LTTVLTLFISGYMLVSGSDLVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITVSLRFLGLSEFALA LGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQNLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQLL GIVGAVIAPPWVAGMAVLLENLYLKPKQEAEVRSRLYARATEAAGSLALPGMDSADASNPEPSFSSGPNGSSNEPEELPQ EESLSPADPVAGRSPY
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=143, Percent_Identity=34.2657342657343, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 44698; Mature: 44567
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRQLTISVSSVALVVATGMLLLLLWQLRSLVLTVMIAVVVAAALAPLVDLAERLRIPR CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH WLGVVLVYLSLIAGIAGLALLIGPTVATQTQRLLTRLPFYLEQLQLLVDTWIADLAGVDP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AALDYLNQLLDPQSLMSWAVRSGQRVLVQSFDFTRGLLGGLLTTVLTLFISGYMLVSGSD HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITVSLRFLGLSEFAL HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQNLETYVLDPLLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKPKQEAEVRSRLYAR CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH ATEAAGSLALPGMDSADASNPEPSFSSGPNGSSNEPEELPQEESLSPADPVAGRSPY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRRQLTISVSSVALVVATGMLLLLLWQLRSLVLTVMIAVVVAAALAPLVDLAERLRIPR CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH WLGVVLVYLSLIAGIAGLALLIGPTVATQTQRLLTRLPFYLEQLQLLVDTWIADLAGVDP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AALDYLNQLLDPQSLMSWAVRSGQRVLVQSFDFTRGLLGGLLTTVLTLFISGYMLVSGSD HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITVSLRFLGLSEFAL HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQNLETYVLDPLLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKPKQEAEVRSRLYAR CCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH ATEAAGSLALPGMDSADASNPEPSFSSGPNGSSNEPEELPQEESLSPADPVAGRSPY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]