| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608137
Identifier: 86608137
GI number: 86608137
Start: 661655
End: 663232
Strand: Direct
Name: 86608137
Synonym: CYB_0649
Alternate gene names: NA
Gene position: 661655-663232 (Clockwise)
Preceding gene: 86608135
Following gene: 86608138
Centisome position: 21.72
GC content: 59.25
Gene sequence:
>1578_bases ATGACTGGAGAGCCAACCCCCATTGACCCCGGGCCGGAGCGGTCTCAGGGCAGCTTGCTGCTAGCTGTGCCCATCCTCGG ATCCCCGCACAGCGCTGTGGGATCCCGACAGTGGCTGGTATGGGGAGCGCTGGGGATCTTTCTGGTGGGTCTGGGGTTGC GCCTGTGGCGGCTGGACGAGTTCCCGGCACCTGTGTTCGATGAGGTGTACTTCCCGGAGTTTGCCCAGAACTACCTGGAT GGCAAGCCTTTTTACGATGTGCATCCCCCCTTGGGCAAGTACTTCATTGCCCTTAGCATTCAGGTGTTTGGCCGCAACGA GTGGGGATTCCGCTTCGCCACTGCTTTTTGCGGATCCCTGATCCCTCTGTTGCTGACCGGTTTAGCCTACCGCCTCACCT ACCACGTGGGCTTTGCTCTGTTGAGCGGGGTTTTGCTGCTGACCGATGGGGTGTTTCTGGTGGAATCCCGCTTTGGCCTG ATCAACGTGTATCTGGTAGCCTTTGGGCTGGCAGCGACCATTCTGTTGCTCAGAGGTCTAGAAAACCAAGGTTGGCGACG GGCTGCTCACTTTGCTTGCTCCGGGATCCTGTTGGGGGCGGCAGCTTCGGTGAAGTGGAATGGCCTCTGGTTTGCCTTCA TGTTTGCTCTGTTGGGGATCCTCGTCTGGGGGGTGGTCTGGCTGCGCCCGCAGTGGATCCCACGGTTGGGCATTTTGATC CAGATTCGTCATCTGCGCTGGTGGCACTATGTGTTTTGCTTCATCCTCGCTCCGCTGGCCTTTTATGCCATTCAGTGGAT CCCGCACCTGCAGCTGAATCCCCAACAGGGACTAACTCTGGATTGGAGCTGGACGGGCATCCAGAATTATTTCCGATCCC TGGTGCTCATCAACCAATCCATCTACGGCGGCCACATGGCAGCCCACCTGGTGGTGAACGAAGAGACCCCTGTTCACCCC TACTGCTCCACCAGCTTGCGATCCCTGGTGGCTTGGTTCCCGGCTTTGCGTCCTTGGCTGACTACGCCCTTGGCCTCGGC AGGAGCTTGGTCCTGGCCAATTCTGGGCCGCCCCGTGGCCTACTACTTCGGCAGTCAGGGCAACCTCTGGCAAGCTGTTC ATGGCTTGGGCAATCCTTGGCTGTGGTGGCTGGGGACGGGATCCATCTTGGTGCTTGTCTGGCGAGGGATCCGCCACTTT CACGGTCTCGAAGCCTTCATTTTGATTGGCTATGCGGCCAATTACCTGCCTTGGTTTAGGGTCAGCCGCTGCGTTTTTAT CTACCACTACATGAGCGCTCTGGCGTTTAGCACCCTAGCCCTGGCTTGGTTGGTGCTGCTGGGCTGGCAGAGCTATCGCC GCTTTTGGCGCGGGGCGAGCATCACGGCGGTGGCCTTGGTTTTGGCGTCCTTTGTCTTCTTTTTCCCCGTTTGGCTTGGC CTGCCCCTCAGTCCAAGCGGATTCTACGCCCGCATGTGGTTTCGCTCTAGCCCGGTGCCGCTGTTCTGTTTCAGCCCCCA ATCCTGCCAACAGCCCCCGCTGCACCTGCCGCCCATCCCCGGCTTGAACTGGATCTAA
Upstream 100 bases:
>100_bases GCAGTGGTTTGCTTTGGAATCGCTTAGACTTTCACGGTCGGCTAAAGTAACACTGGGGATCCCTAGGGATCCTCGCCGGA GTGTTGAGAGTGCCCTATCC
Downstream 100 bases:
>100_bases GGGAGGCATGGTAAGCTTTGTGAAGTTTGTTTCGTGAAATGCGGCGCTCCGTTACCGAAAGATGGAGCGAGGTTCGCGAA ACCCTTGTGGTAGAGGTAGT
Product: dolichyl-phosphate-mannose-protein mannosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MTGEPTPIDPGPERSQGSLLLAVPILGSPHSAVGSRQWLVWGALGIFLVGLGLRLWRLDEFPAPVFDEVYFPEFAQNYLD GKPFYDVHPPLGKYFIALSIQVFGRNEWGFRFATAFCGSLIPLLLTGLAYRLTYHVGFALLSGVLLLTDGVFLVESRFGL INVYLVAFGLAATILLLRGLENQGWRRAAHFACSGILLGAAASVKWNGLWFAFMFALLGILVWGVVWLRPQWIPRLGILI QIRHLRWWHYVFCFILAPLAFYAIQWIPHLQLNPQQGLTLDWSWTGIQNYFRSLVLINQSIYGGHMAAHLVVNEETPVHP YCSTSLRSLVAWFPALRPWLTTPLASAGAWSWPILGRPVAYYFGSQGNLWQAVHGLGNPWLWWLGTGSILVLVWRGIRHF HGLEAFILIGYAANYLPWFRVSRCVFIYHYMSALAFSTLALAWLVLLGWQSYRRFWRGASITAVALVLASFVFFFPVWLG LPLSPSGFYARMWFRSSPVPLFCFSPQSCQQPPLHLPPIPGLNWI
Sequences:
>Translated_525_residues MTGEPTPIDPGPERSQGSLLLAVPILGSPHSAVGSRQWLVWGALGIFLVGLGLRLWRLDEFPAPVFDEVYFPEFAQNYLD GKPFYDVHPPLGKYFIALSIQVFGRNEWGFRFATAFCGSLIPLLLTGLAYRLTYHVGFALLSGVLLLTDGVFLVESRFGL INVYLVAFGLAATILLLRGLENQGWRRAAHFACSGILLGAAASVKWNGLWFAFMFALLGILVWGVVWLRPQWIPRLGILI QIRHLRWWHYVFCFILAPLAFYAIQWIPHLQLNPQQGLTLDWSWTGIQNYFRSLVLINQSIYGGHMAAHLVVNEETPVHP YCSTSLRSLVAWFPALRPWLTTPLASAGAWSWPILGRPVAYYFGSQGNLWQAVHGLGNPWLWWLGTGSILVLVWRGIRHF HGLEAFILIGYAANYLPWFRVSRCVFIYHYMSALAFSTLALAWLVLLGWQSYRRFWRGASITAVALVLASFVFFFPVWLG LPLSPSGFYARMWFRSSPVPLFCFSPQSCQQPPLHLPPIPGLNWI >Mature_524_residues TGEPTPIDPGPERSQGSLLLAVPILGSPHSAVGSRQWLVWGALGIFLVGLGLRLWRLDEFPAPVFDEVYFPEFAQNYLDG KPFYDVHPPLGKYFIALSIQVFGRNEWGFRFATAFCGSLIPLLLTGLAYRLTYHVGFALLSGVLLLTDGVFLVESRFGLI NVYLVAFGLAATILLLRGLENQGWRRAAHFACSGILLGAAASVKWNGLWFAFMFALLGILVWGVVWLRPQWIPRLGILIQ IRHLRWWHYVFCFILAPLAFYAIQWIPHLQLNPQQGLTLDWSWTGIQNYFRSLVLINQSIYGGHMAAHLVVNEETPVHPY CSTSLRSLVAWFPALRPWLTTPLASAGAWSWPILGRPVAYYFGSQGNLWQAVHGLGNPWLWWLGTGSILVLVWRGIRHFH GLEAFILIGYAANYLPWFRVSRCVFIYHYMSALAFSTLALAWLVLLGWQSYRRFWRGASITAVALVLASFVFFFPVWLGL PLSPSGFYARMWFRSSPVPLFCFSPQSCQQPPLHLPPIPGLNWI
Specific function: Unknown
COG id: COG1928
COG function: function code O; Dolichyl-phosphate-mannose--protein O-mannosyl transferase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 39 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: NA
Molecular weight: Translated: 59379; Mature: 59248
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGEPTPIDPGPERSQGSLLLAVPILGSPHSAVGSRQWLVWGALGIFLVGLGLRLWRLDE CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCC FPAPVFDEVYFPEFAQNYLDGKPFYDVHPPLGKYFIALSIQVFGRNEWGFRFATAFCGSL CCCCHHHHCCCHHHHHHHCCCCCCCCCCCCHHHEEEEEEEEEEECCCCCHHHHHHHHHHH IPLLLTGLAYRLTYHVGFALLSGVLLLTDGVFLVESRFGLINVYLVAFGLAATILLLRGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCC ENQGWRRAAHFACSGILLGAAASVKWNGLWFAFMFALLGILVWGVVWLRPQWIPRLGILI CCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE QIRHLRWWHYVFCFILAPLAFYAIQWIPHLQLNPQQGLTLDWSWTGIQNYFRSLVLINQS EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHCCC IYGGHMAAHLVVNEETPVHPYCSTSLRSLVAWFPALRPWLTTPLASAGAWSWPILGRPVA CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE YYFGSQGNLWQAVHGLGNPWLWWLGTGSILVLVWRGIRHFHGLEAFILIGYAANYLPWFR EEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH VSRCVFIYHYMSALAFSTLALAWLVLLGWQSYRRFWRGASITAVALVLASFVFFFPVWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC LPLSPSGFYARMWFRSSPVPLFCFSPQSCQQPPLHLPPIPGLNWI CCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TGEPTPIDPGPERSQGSLLLAVPILGSPHSAVGSRQWLVWGALGIFLVGLGLRLWRLDE CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCC FPAPVFDEVYFPEFAQNYLDGKPFYDVHPPLGKYFIALSIQVFGRNEWGFRFATAFCGSL CCCCHHHHCCCHHHHHHHCCCCCCCCCCCCHHHEEEEEEEEEEECCCCCHHHHHHHHHHH IPLLLTGLAYRLTYHVGFALLSGVLLLTDGVFLVESRFGLINVYLVAFGLAATILLLRGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCC ENQGWRRAAHFACSGILLGAAASVKWNGLWFAFMFALLGILVWGVVWLRPQWIPRLGILI CCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE QIRHLRWWHYVFCFILAPLAFYAIQWIPHLQLNPQQGLTLDWSWTGIQNYFRSLVLINQS EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHCCC IYGGHMAAHLVVNEETPVHPYCSTSLRSLVAWFPALRPWLTTPLASAGAWSWPILGRPVA CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE YYFGSQGNLWQAVHGLGNPWLWWLGTGSILVLVWRGIRHFHGLEAFILIGYAANYLPWFR EEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH VSRCVFIYHYMSALAFSTLALAWLVLLGWQSYRRFWRGASITAVALVLASFVFFFPVWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC LPLSPSGFYARMWFRSSPVPLFCFSPQSCQQPPLHLPPIPGLNWI CCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]