| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608135
Identifier: 86608135
GI number: 86608135
Start: 657739
End: 659346
Strand: Direct
Name: 86608135
Synonym: CYB_0647
Alternate gene names: NA
Gene position: 657739-659346 (Clockwise)
Preceding gene: 86608134
Following gene: 86608137
Centisome position: 21.59
GC content: 58.96
Gene sequence:
>1608_bases ATGGGTTATCTCGCCTTGGTACTCCACGCGCACCTGCCGTTTGTGCGCCACCCTGAGCAAGACTTTGTGCTGGAGGAAGA ATGGCTCTACGAAGCCATCACGGAGACCTATGTGCCGCTGCTGCACATGTTCGAGGGGCTACAGCGAGATGGCATCGACT TTCGTTTCACCATGTCCCTGACGCCGCCCTTGGTGTCGATGCTGCGGGATCCCTTGCTGCAGGAGCGCTACGACCACTAC CTAACCAAATTGGAAGAGCTGGCCCAGCTGGAGTACGACAAAAACGCCACCAACGGCCACATTCGCTACCTGGCGGAGCA CTACATCAAGCAGTTTGCCATGGTGCGGGATCTCTGGGAGCGCTACGACCGGGATCTGGTGCGGGCCTTTCGACAGTTTC AAGACAGCGGCAACCTGGAGATCATCACCTGTGGGGCTACCCACGGCTACCTGCCCTTGATGCAGATGTACCCGCAGGCA GTCTGGGCGCAGTTGATTGTAGCTTGTGAGCACTACAACGAACACTTTGGCCAGTGGCCGCGGGGGATCTGGCTGCCGGA ATGCGCCTACTACCAAGGGCTGGAGCGGATGATTGCCGATGCCGGCCTGCGCTACATGATCACCGACGCCCATGGTCTTC TCTACGCCAAGCCCCGGCCTCGTTACGGCATGTACGCCCCTATTTTTACCGAGACCGGCGTCGCCGTTTTCGGGCGGGAT CACGAGTCTTCGCAGCAGGTGTGGTCGGCAGAGGTGGGCTATCCAGGGGATCCGGTTTACCGCGAGTTCTACAAAGACCT AGGGTATGAGGCCGACTACGAGTACATCAAGCCTTACATCATGCCCAACGGCCAGCGGAAAAACACCGGCATCAAGTACC ACCGCATCACCGGGCGCAACCTGGACCTGGGGCAAAAGCAGCTTTACGACCCCTATTGGGCGCGGGAGAAAGCGGCAGAG CATGCGGGCAACTTTATGTTCAACCGCCAGCGGCAAATCGAATATTTGTACAGCGTCATGGGCCGCCCGCCGCTGGTGGT GGCCCCCTACGATGCGGAGTTGTTCGGCCACTGGTGGTACGAGGGCCCTTGGTTTTTGGATTTTCTCATCCGCAAGAGCT ACTTCGACCAAAACACCTACCGCATGACTCACCTGGCGGAGTACCTGCGGGAGAACCCCACCCAGCAGGTGTGCAAACCT GCCCAGTCCAGTTGGGGGGCGCGCGGCTTCCACGAGTACTGGCTCAACCCCACCAACGCCTGGATCTACCCCCACCTGCA CAAGGCCACCGAGCGGATGATCGAGCTGAGCCGTCGCGAGCCTGCCGATGACCTAGAATGGCGGGCCTTGAACCAGGCGG CGCGAGAATTGCTACTGGCTCAATCGTCTGACTGGGCTTTTATCATGCGCACAGGGACGATGGTTCCCTATGCAGTGCGC CGCACCAAGTCCCATCTGCTGCGCTTCAACCACCTCTACGAGAAGATCAAAGAGGGTCAGTTTCGGCGAGAAAAAGCCAC CCCTGAAGAGGAGCAGTGGCTGGCCAAGGTGGAATACATGGACAACATCTTCCCCAATATCAACTACCGGGTTTACCGAC CCCTCTAA
Upstream 100 bases:
>100_bases TAGGTAGCAATCTTGGGCTTAACCTTCTCTACAGATTTGCTGCTGAGAAGGGTAAGTCTGCTCCGTTATCTTTCCCTGTC TGTAAGGATCCCCGGCTGCC
Downstream 100 bases:
>100_bases GCCGGTTGGGCAGGTCTGGAGGGTGCCTGCTTCCGACCGCCAGAGACACCAGAGGCAGAAGTTTCCGGCTACCCTCCTTG AGGGGATCGAACTACCCCAG
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Alpha-Amylase; (1-_4)-Alpha-D-Glucan Branching; Family; Glycogen Branching; Glycosyl Transferase/Glycoside Hydrolase-Like Protein; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MGYLALVLHAHLPFVRHPEQDFVLEEEWLYEAITETYVPLLHMFEGLQRDGIDFRFTMSLTPPLVSMLRDPLLQERYDHY LTKLEELAQLEYDKNATNGHIRYLAEHYIKQFAMVRDLWERYDRDLVRAFRQFQDSGNLEIITCGATHGYLPLMQMYPQA VWAQLIVACEHYNEHFGQWPRGIWLPECAYYQGLERMIADAGLRYMITDAHGLLYAKPRPRYGMYAPIFTETGVAVFGRD HESSQQVWSAEVGYPGDPVYREFYKDLGYEADYEYIKPYIMPNGQRKNTGIKYHRITGRNLDLGQKQLYDPYWAREKAAE HAGNFMFNRQRQIEYLYSVMGRPPLVVAPYDAELFGHWWYEGPWFLDFLIRKSYFDQNTYRMTHLAEYLRENPTQQVCKP AQSSWGARGFHEYWLNPTNAWIYPHLHKATERMIELSRREPADDLEWRALNQAARELLLAQSSDWAFIMRTGTMVPYAVR RTKSHLLRFNHLYEKIKEGQFRREKATPEEEQWLAKVEYMDNIFPNINYRVYRPL
Sequences:
>Translated_535_residues MGYLALVLHAHLPFVRHPEQDFVLEEEWLYEAITETYVPLLHMFEGLQRDGIDFRFTMSLTPPLVSMLRDPLLQERYDHY LTKLEELAQLEYDKNATNGHIRYLAEHYIKQFAMVRDLWERYDRDLVRAFRQFQDSGNLEIITCGATHGYLPLMQMYPQA VWAQLIVACEHYNEHFGQWPRGIWLPECAYYQGLERMIADAGLRYMITDAHGLLYAKPRPRYGMYAPIFTETGVAVFGRD HESSQQVWSAEVGYPGDPVYREFYKDLGYEADYEYIKPYIMPNGQRKNTGIKYHRITGRNLDLGQKQLYDPYWAREKAAE HAGNFMFNRQRQIEYLYSVMGRPPLVVAPYDAELFGHWWYEGPWFLDFLIRKSYFDQNTYRMTHLAEYLRENPTQQVCKP AQSSWGARGFHEYWLNPTNAWIYPHLHKATERMIELSRREPADDLEWRALNQAARELLLAQSSDWAFIMRTGTMVPYAVR RTKSHLLRFNHLYEKIKEGQFRREKATPEEEQWLAKVEYMDNIFPNINYRVYRPL >Mature_534_residues GYLALVLHAHLPFVRHPEQDFVLEEEWLYEAITETYVPLLHMFEGLQRDGIDFRFTMSLTPPLVSMLRDPLLQERYDHYL TKLEELAQLEYDKNATNGHIRYLAEHYIKQFAMVRDLWERYDRDLVRAFRQFQDSGNLEIITCGATHGYLPLMQMYPQAV WAQLIVACEHYNEHFGQWPRGIWLPECAYYQGLERMIADAGLRYMITDAHGLLYAKPRPRYGMYAPIFTETGVAVFGRDH ESSQQVWSAEVGYPGDPVYREFYKDLGYEADYEYIKPYIMPNGQRKNTGIKYHRITGRNLDLGQKQLYDPYWAREKAAEH AGNFMFNRQRQIEYLYSVMGRPPLVVAPYDAELFGHWWYEGPWFLDFLIRKSYFDQNTYRMTHLAEYLRENPTQQVCKPA QSSWGARGFHEYWLNPTNAWIYPHLHKATERMIELSRREPADDLEWRALNQAARELLLAQSSDWAFIMRTGTMVPYAVRR TKSHLLRFNHLYEKIKEGQFRREKATPEEEQWLAKVEYMDNIFPNINYRVYRPL
Specific function: Unknown
COG id: COG1543
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63803; Mature: 63672
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYLALVLHAHLPFVRHPEQDFVLEEEWLYEAITETYVPLLHMFEGLQRDGIDFRFTMSL CCHHHHHHHHHCCCCCCCCHHCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC TPPLVSMLRDPLLQERYDHYLTKLEELAQLEYDKNATNGHIRYLAEHYIKQFAMVRDLWE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RYDRDLVRAFRQFQDSGNLEIITCGATHGYLPLMQMYPQAVWAQLIVACEHYNEHFGQWP HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RGIWLPECAYYQGLERMIADAGLRYMITDAHGLLYAKPRPRYGMYAPIFTETGVAVFGRD CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCHHCCCEEEEECC HESSQQVWSAEVGYPGDPVYREFYKDLGYEADYEYIKPYIMPNGQRKNTGIKYHRITGRN CCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCEECCCCCCCCCCEEEEEECCCC LDLGQKQLYDPYWAREKAAEHAGNFMFNRQRQIEYLYSVMGRPPLVVAPYDAELFGHWWY CCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCC EGPWFLDFLIRKSYFDQNTYRMTHLAEYLRENPTQQVCKPAQSSWGARGFHEYWLNPTNA CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCCCC WIYPHLHKATERMIELSRREPADDLEWRALNQAARELLLAQSSDWAFIMRTGTMVPYAVR EECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH RTKSHLLRFNHLYEKIKEGQFRREKATPEEEQWLAKVEYMDNIFPNINYRVYRPL HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC >Mature Secondary Structure GYLALVLHAHLPFVRHPEQDFVLEEEWLYEAITETYVPLLHMFEGLQRDGIDFRFTMSL CHHHHHHHHHCCCCCCCCHHCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC TPPLVSMLRDPLLQERYDHYLTKLEELAQLEYDKNATNGHIRYLAEHYIKQFAMVRDLWE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RYDRDLVRAFRQFQDSGNLEIITCGATHGYLPLMQMYPQAVWAQLIVACEHYNEHFGQWP HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RGIWLPECAYYQGLERMIADAGLRYMITDAHGLLYAKPRPRYGMYAPIFTETGVAVFGRD CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCHHCCCEEEEECC HESSQQVWSAEVGYPGDPVYREFYKDLGYEADYEYIKPYIMPNGQRKNTGIKYHRITGRN CCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCEECCCCCCCCCCEEEEEECCCC LDLGQKQLYDPYWAREKAAEHAGNFMFNRQRQIEYLYSVMGRPPLVVAPYDAELFGHWWY CCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCC EGPWFLDFLIRKSYFDQNTYRMTHLAEYLRENPTQQVCKPAQSSWGARGFHEYWLNPTNA CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCCCC WIYPHLHKATERMIELSRREPADDLEWRALNQAARELLLAQSSDWAFIMRTGTMVPYAVR EECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH RTKSHLLRFNHLYEKIKEGQFRREKATPEEEQWLAKVEYMDNIFPNINYRVYRPL HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA